Name: Halocatena pleomorpha JCM 31368
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 164042

Type strain:

Species: Halocatena pleomorpha

Culture col. no.: JCM 31368, KCTC 4276, MTCC 12579

Strain history: S. Krishnamurthi; MTCC, India; SPP-AMP-1.

NCBI tax ID(s): 1785090 (species)

Special Collections

JCM
KCTC

Section

Halocatena pleomorpha JCM 31368 is a mesophilic archaeon that was isolated from Salt pan soil in Panaji.

mesophilic
16S sequence
Archaea
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Archaea*
	Phylum	*Methanobacteriota*
	Class	*Halobacteria*
	Order	*Halobacteriales*
	Family	*Halobacteriaceae*
	Genus	*Halocatena*
	Species	**Halocatena pleomorpha**
	Full Scientific Name (LPSN)	Halocatena pleomorpha Verma et al. 2020

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: MK-8

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Salt pan soil in Panaji
[Ref.: #67770]	Geographic location (country and/or sea, region)	Goa
[Ref.: #67770]	Country	India
[Ref.: #67770]	Country ISO 3 Code	IND
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Halomarina sp. SPP-AMP-1 partial 16S rRNA gene, isolate SPP-AMP-1	LT009694	1465	GenBank ENA	1785090 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Halocatena pleomorpha SPP-AMP-1	GCA_003862495	contig	GenBank ENA	1785090 tax ID

[Ref.: #67770]

GC-content

57.7 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Halocatena pleomorpha SPP-AMP-1 NCBI: GCA_003862495.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	76.21	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	81.725	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	77.129	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	79.57	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	74.483	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	86	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 31368, KCTC 4276, MTCC 12579

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Halocatena pleomorpha gen. nov. sp. nov., an extremely halophilic archaeon of family Halobacteriaceae isolated from saltpan soil.	Verma A, Pal Y, Kumar P, Krishnamurthi S	Int J Syst Evol Microbiol	10.1099/ijsem.0.004222	2020	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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Halocatena pleomorpha SPP-AMP-1

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