Strain identifier
BacDive ID: 163947
Type strain: 
Species: Acetobacter oryzifermentans
Strain history: C. O. Jeon; Chung-Ang Univ., South Korea; SLV-7.
NCBI tax ID(s): 1633874 (species)
General
@ref: 67770
BacDive-ID: 163947
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Acetobacter oryzifermentans JCM 31096 is a mesophilic bacterium that was isolated from Korean traditional rice vinegar.
NCBI tax id
- NCBI tax id: 1633874
- Matching level: species
strain history
- @ref: 67770
- history: C. O. Jeon; Chung-Ang Univ., South Korea; SLV-7.
doi: 10.13145/bacdive163947.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Rhodospirillales
- family: Acetobacteraceae
- genus: Acetobacter
- species: Acetobacter oryzifermentans
- full scientific name: Acetobacter oryzifermentans Kim et al. 2019
@ref: 67770
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhodospirillales
family: Acetobacteraceae
genus: Acetobacter
species: Acetobacter oryzifermentans
full scientific name: Acetobacter oryzifermentans Kim et al. 2019
type strain: yes
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
observation
- @ref: 67770
- observation: quinones: Q-9
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Korean traditional rice vinegar
taxonmaps
- @ref: 69479
- File name: preview.99_214.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_29;96_152;97_163;98_182;99_214&stattab=map
- Last taxonomy: Acetobacter
- 16S sequence: KR025515
- Sequence Identity:
- Total samples: 12367
- soil counts: 1742
- aquatic counts: 1945
- animal counts: 7743
- plant counts: 937
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 67770 | Acetobacter sp. SLV-7 16S ribosomal RNA gene, partial sequence | KP205434 | 1292 | ena | 1633874 |
| 67770 | Acetobacter sp. SLV-7 16S ribosomal RNA gene, partial sequence | KR025515 | 1476 | ena | 1633874 |
Genome sequences
- @ref: 67770
- description: Acetobacter oryzifermentans SLV-7
- accession: GCA_001628715
- assembly level: complete
- database: ncbi
- NCBI tax ID: 1633874
GC content
- @ref: 67770
- GC-content: 52.4
- method: genome sequence analysis
External links
@ref: 67770
culture collection no.: JCM 31096, KACC 19301, LMG 31327
literature
- topic: Phylogeny
- Pubmed-ID: 29655875
- title: Acetobacter oryzifermentans sp. nov., isolated from Korean traditional vinegar and reclassification of the type strains of Acetobacter pasteurianus subsp. ascendens (Henneberg 1898) and Acetobacter pasteurianus subsp. paradoxus (Frateur 1950) as Acetobacter ascendens sp. nov., comb. nov.
- authors: Kim KH, Cho GY, Chun BH, Weckx S, Moon JY, Yeo SH, Jeon CO
- journal: Syst Appl Microbiol
- DOI: 10.1016/j.syapm.2018.03.003
- year: 2018
- mesh: *Acetic Acid, Acetobacter/*classification/*genetics/isolation & purification, Bacterial Typing Techniques/*methods, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Nucleic Acid Hybridization, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA
- topic2: Transcriptome
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |