Strain identifier
BacDive ID: 163864
Type strain: 
Species: Sandaracinobacter neustonicus
Strain history: C. Y. Hwang; KOPRI, South Korea; PAMC 28131.
NCBI tax ID(s): 1715348 (species)
version 8.1 (current version)
General
@ref: 67770
BacDive-ID: 163864
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Sandaracinobacter neustonicus JCM 30734 is a mesophilic bacterium that was isolated from Sea surface microlayer sample in the open water of the Pacific Ocean .
NCBI tax id
- NCBI tax id: 1715348
- Matching level: species
strain history
- @ref: 67770
- history: C. Y. Hwang; KOPRI, South Korea; PAMC 28131.
doi: 10.13145/bacdive163864.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Sphingomonadales
- family: Sphingosinicellaceae
- genus: Sandaracinobacter
- species: Sandaracinobacter neustonicus
- full scientific name: Sandaracinobacter neustonicus Lee et al. 2020
@ref: 67770
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Sphingomonadales
family: Sphingosinicellaceae
genus: Sandaracinobacter
species: Sandaracinobacter neustonicus
full scientific name: Sandaracinobacter neustonicus Lee et al. 2020
type strain: yes
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
observation
- @ref: 67770
- observation: quinones: Q-10
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Sea surface microlayer sample in the open water of the Pacific Ocean (29.86° S, 171.86° E)
- latitude: -29.86
- longitude: 171.86
taxonmaps
- @ref: 69479
- File name: preview.99_184810.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_20;96_5173;97_22217;98_120268;99_184810&stattab=map
- Last taxonomy: Sandaracinobacter
- 16S sequence: KR052095
- Sequence Identity:
- Total samples: 239
- soil counts: 14
- aquatic counts: 178
- animal counts: 44
- plant counts: 3
Sequence information
16S sequences
- @ref: 67770
- description: Sandaracinobacter sp. PAMC 28131 16S ribosomal RNA gene, partial sequence
- accession: KR052095
- length: 1417
- database: ena
- NCBI tax ID: 1715348
Genome sequences
- @ref: 67770
- description: Sandaracinobacter neustonicus PAMC 28131
- accession: GCA_006385875
- assembly level: contig
- database: ncbi
- NCBI tax ID: 1715348
GC content
- @ref: 67770
- GC-content: 65.3
- method: genome sequence analysis
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | yes | 53.943 | no |
| flagellated | no | 87.099 | no |
| gram-positive | no | 97.842 | no |
| anaerobic | no | 98.834 | no |
| aerobic | yes | 89.277 | no |
| halophile | no | 93.215 | no |
| spore-forming | no | 96.334 | no |
| thermophile | no | 96.619 | yes |
| glucose-util | yes | 73.803 | no |
| glucose-ferment | no | 93.336 | no |
External links
@ref: 67770
culture collection no.: JCM 30734, KCCM 43127
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 32701426 | Sandaracinobacter neustonicus sp. nov., isolated from the sea surface microlayer in the Southwestern Pacific Ocean, and emended description of the genus Sandaracinobacter. | Lee I, Jang GI, Cho Y, Yoon SJ, Pham HM, Nguyen AV, Lee YM, Park H, Rhee TS, Kim SH, Hwang CY | Int J Syst Evol Microbiol | 10.1099/ijsem.0.004333 | 2020 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Pacific Ocean, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Sphingomonadaceae/*classification/isolation & purification | Transcriptome |
| Phylogeny | 34302507 | Sandaracinobacteroides hominis gen. nov., sp. nov., isolated from human skin. | Qu PH, Luo HM, Feng JH, Li S, Chen C, Dong L, Ming YZ, Li WJ, Lin Y | Arch Microbiol | 10.1007/s00203-021-02454-9 | 2021 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, *Fatty Acids, Humans, *Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Ubiquinone | Pathogenicity |
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |