Cite this strain

"Sandaracinobacter neustonicus" (KCCM 43127, JCM 30734)

BacDive ID 163864

Type strain

Culture col. no. KCCM 43127 JCM 30734

NCBI tax ID(s) 1715348

Special Collections JCM

History JCM <-- C. Y. Hwang; KOPRI, South Korea; PAMC 28131.

Links

"Sandaracinobacter neustonicus" JCM 30734 is a bacterium that was isolated from Sea surface microlayer sample in the open water of the Pacific Ocean .

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 394545

JCM 30734

@ref 20215

Last LPSN update 2026-05-29 08:45:16

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Sphingomonadales

Family Sphingosinicellaceae

Genus "Sandaracinobacter"

Species "Sandaracinobacter neustonicus"

Full scientific name Sandaracinobacter neustonicus Lee et al. 2020

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	94.994

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
67770	positive	growth	30

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	92.731

Spore formation

@ref	Spore formation	Confidence
125439		93.578

Observation

67770

Observationquinones: Q-10

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Latitude	Longitude
67770	Sea surface microlayer sample in the open water of the Pacific Ocean (29.86° S, 171.86° E)	-29.86	171.86 -29.86/171.86

Taxonmaps

69479

Global distribution of 16S sequence KR052095 (>99% sequence identity) for Sandaracinobacter from Microbeatlas

Aquatic Samples	178
Soil Samples	14
Animal Samples	44
Plant Samples	3
Total Samples	239

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM638587v1 assembly for Sandaracinobacter neustonicus PAMC 28131	contig	GCA_006385875	1715348.4	2887172900	1715348	72.07

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Sandaracinobacter sp. PAMC 28131 16S ribosomal RNA gene, partial sequence	KR052095	1417		1715348

GC content

@ref	GC-content (mol%)	Method
67770	65.3	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM638587v1 assembly for Sandaracinobacter neustonicus PAMC 28131
NCBI: GCA_006385875

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	92.73	no
125439	motility	BacteriaNetⓘ	yes	44.92	no
125439	gram_stain	BacteriaNetⓘ	negative	73.13	no
125439	spore_formation	BacteriaNetⓘ	no	93.58	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Sandaracinobacter neustonicus PAMC 28131
NCBI: GCA_006385875.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	94.99	no
125438	anaerobic	anaerobicⓘ	no	94.68	no
125438	aerobic	aerobicⓘ	yes	83.68	no
125438	spore-forming	spore-formingⓘ	no	89.91	no
125438	thermophilic	thermophileⓘ	no	93.99	no
125438	flagellated	motile2+ⓘ	no	50.48	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Sandaracinobacteroides sayramensis sp. nov., a yellow-pigmented bacterium isolated from lake water.	Xamxidin M, Ou XY, Huang XP, Abliz A, Wang T, Chen C, Wu M.	Int J Syst Evol Microbiol	10.1099/ijsem.0.005692	2023
Phylogeny	Sandaracinobacteroides hominis gen. nov., sp. nov., isolated from human skin.	Qu PH, Luo HM, Feng JH, Li S, Chen C, Dong L, Ming YZ, Li WJ, Lin Y	Arch Microbiol	10.1007/s00203-021-02454-9	2021
Phylogeny	Sandaracinobacter neustonicus sp. nov., isolated from the sea surface microlayer in the Southwestern Pacific Ocean, and emended description of the genus Sandaracinobacter.	Lee I, Jang GI, Cho Y, Yoon SJ, Pham HM, Nguyen AV, Lee YM, Park H, Rhee TS, Kim SH, Hwang CY	Int J Syst Evol Microbiol	10.1099/ijsem.0.004333	2020

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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"Sandaracinobacter neustonicus" (KCCM 43127, JCM 30734)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Isolation, sampling and environmental information

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_006385875

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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