Strain identifier
BacDive ID: 16375
Type strain: 
Species: Streptomyces scopiformis
Strain Designation: A25
Strain history: AS 4.1331 <-- W. Li et al. A25.
NCBI tax ID(s): 104206 (species)
version 8.1 (current version)
General
@ref: 10608
BacDive-ID: 16375
DSM-Number: 41825
keywords: 16S sequence, Bacteria, mesophilic
description: Streptomyces scopiformis A25 is a mesophilic bacterium that was isolated from soil.
NCBI tax id
- NCBI tax id: 104206
- Matching level: species
strain history
| @ref | history |
|---|---|
| 10608 | <- Z. Liu, AS, China |
| 67770 | AS 4.1331 <-- W. Li et al. A25. |
doi: 10.13145/bacdive16375.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces scopiformis
- full scientific name: Streptomyces scopiformis Li et al. 2002
@ref: 10608
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces scopiformis
full scientific name: Streptomyces scopiformis Li et al. 2002
strain designation: A25
type strain: yes
Morphology
multimedia
- @ref: 10608
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_41825.jpg
- caption: Medium 65 28°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
- @ref: 10608
- name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
- growth: yes
- link: https://mediadive.dsmz.de/medium/65
- composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 10608 | positive | growth | 28 | mesophilic |
| 67770 | positive | growth | 28 | mesophilic |
Physiology and metabolism
observation
- @ref: 67770
- observation: quinones: MK-9(H4), MK-9(H6)
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent | host species |
|---|---|---|---|---|---|---|
| 10608 | soil | Jiangxi Province, Lushan mountain | China | CHN | Asia | |
| 67770 | Soil from rhizosphere of Chinese hemlock (Tsuga chinensis) | Lushan Mountain, Jiangxi Province | China | CHN | Asia | Tsuga chinensis |
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
Safety information
risk assessment
- @ref: 10608
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 10608 | Streptomyces sp. A25 16S ribosomal RNA gene, partial sequence | AF184081 | 1402 | ena | 104206 |
| 67770 | Streptomyces scopiformis gene for 16S rRNA, partial sequence, strain: NBRC 100244 | AB249927 | 1482 | ena | 104206 |
GC content
| @ref | GC-content | method |
|---|---|---|
| 10608 | 71 | |
| 67770 | 71 | thermal denaturation, midpoint method (Tm) |
External links
@ref: 10608
culture collection no.: DSM 41825, AS 4.1331, LMG 20251, JCM 12114, BCRC 16364, CGMCC 4.1331, NBRC 100244
straininfo link
- @ref: 85429
- straininfo: 27585
literature
- topic: Phylogeny
- Pubmed-ID: 12361266
- title: Streptomyces scopiformis sp. nov., a novel streptomycete with fastigiate spore chains.
- authors: Li W, Lanoot B, Zhang Y, Vancanneyt M, Swings J, Liu Z
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/00207713-52-5-1629
- year: 2002
- mesh: Base Composition, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/genetics, Microscopy, Electron, Scanning, Molecular Sequence Data, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Soil Microbiology, Spores, Bacterial/ultrastructure, Streptomyces/*classification/genetics/isolation & purification/ultrastructure
- topic2: Genetics
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 10608 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 41825) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-41825 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 85429 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID27585.1 | StrainInfo: A central database for resolving microbial strain identifiers |