Strain identifier
BacDive ID: 163722
Type strain: 
Species: Flavobacterium shanxiense
Strain history: H. Qing; Coll. of Life Sci., Nanjing Agric. Univ., China; YF-2.
NCBI tax ID(s): 1510192 (species)
version 8.1 (current version)
General
@ref: 67770
BacDive-ID: 163722
keywords: 16S sequence, Bacteria, mesophilic
description: Flavobacterium shanxiense JCM 30153 is a mesophilic bacterium that was isolated from Farmland soil.
NCBI tax id
- NCBI tax id: 1510192
- Matching level: species
strain history
- @ref: 67770
- history: H. Qing; Coll. of Life Sci., Nanjing Agric. Univ., China; YF-2.
doi: 10.13145/bacdive163722.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Flavobacteriia
- order: Flavobacteriales
- family: Flavobacteriaceae
- genus: Flavobacterium
- species: Flavobacterium shanxiense
- full scientific name: Flavobacterium shanxiense Yang et al. 2015
@ref: 67770
domain: Bacteria
phylum: Bacteroidetes
class: Flavobacteriia
order: Flavobacteriales
family: Flavobacteriaceae
genus: Flavobacterium
species: Flavobacterium shanxiense
full scientific name: Flavobacterium shanxiense Yang et al.
type strain: yes
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
observation
- @ref: 67770
- observation: quinones: MK-6
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Farmland soil
- geographic location: Yuncheng City, Shanxi Province
- country: China
- origin.country: CHN
- continent: Asia
taxonmaps
- @ref: 69479
- File name: preview.99_36341.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_66;96_5013;97_21369;98_26800;99_36341&stattab=map
- Last taxonomy: Flavobacterium
- 16S sequence: KJ641612
- Sequence Identity:
- Total samples: 997
- soil counts: 51
- aquatic counts: 498
- animal counts: 359
- plant counts: 89
Sequence information
16S sequences
- @ref: 67770
- description: Flavobacterium shanxiense 16S ribosomal RNA gene, partial sequence
- accession: KJ641612
- length: 1475
- database: ena
- NCBI tax ID: 1510192
GC content
- @ref: 67770
- GC-content: 35.2
- method: high performance liquid chromatography (HPLC)
External links
@ref: 67770
culture collection no.: JCM 30153, CCTCC AB 2014079
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 25726422 | Flavobacterium shanxiense sp. nov., isolated from soil. | Yang F, Liu HM, Zhang R, Chen DB, Wang X, Yan X, Hong Q, Li SP | Curr Microbiol | 10.1007/s00284-015-0792-z | 2015 | Bacterial Typing Techniques, China, Cities, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Flavobacterium/*classification/genetics/*isolation & purification/physiology, Hydrogen-Ion Concentration, Molecular Sequence Data, Phospholipids/analysis, Phylogeny, Pigments, Biological/analysis, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Sodium Chloride/metabolism, *Soil Microbiology, Temperature | Genetics |
| Phylogeny | 26769164 | Flavobacterium lutivivi sp. nov., isolated from activated sludge. | Feng Q, Han L, Nogi Y, Hong Q, Lv J | Int J Syst Evol Microbiol | 10.1099/ijsem.0.000892 | 2016 |
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |