Strain identifier

BacDive ID: 163340

Type strain: No

Species: Planococcus citreus

Strain history: M. V. Hao HK 708 <-- AJ 3349 <-- CCM 2389 <-- E. Leifson XQ40.

NCBI tax ID(s): 1373 (species)

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General

@ref: 67770

BacDive-ID: 163340

keywords: 16S sequence, Bacteria

description: Planococcus citreus JCM 2535 is a bacterium that was isolated from Marine clam.

NCBI tax id

  • NCBI tax id: 1373
  • Matching level: species

strain history

  • @ref: 67770
  • history: M. V. Hao HK 708 <-- AJ 3349 <-- CCM 2389 <-- E. Leifson XQ40.

doi: 10.13145/bacdive163340.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Caryophanaceae
  • genus: Planococcus
  • species: Planococcus citreus
  • full scientific name: Planococcus citreus Migula 1894 (Approved Lists 1980)

@ref: 67770

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Caryophanales

family: Caryophanaceae

genus: Planococcus

species: Planococcus citreus

full scientific name: Planococcus citreus Migula 1894

type strain: no

Culture and growth conditions

culture temp

  • @ref: 67770
  • growth: positive
  • type: growth
  • temperature: 30

Physiology and metabolism

observation

  • @ref: 67770
  • observation: quinones: MK-8 (MK-7)

Isolation, sampling and environmental information

isolation

  • @ref: 67770
  • sample type: Marine clam

taxonmaps

  • @ref: 69479
  • File name: preview.99_82.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_67;97_70;98_75;99_82&stattab=map
  • Last taxonomy: Planococcus
  • 16S sequence: LC379148
  • Sequence Identity:
  • Total samples: 37
  • soil counts: 15
  • aquatic counts: 9
  • animal counts: 9
  • plant counts: 4

Sequence information

16S sequences

  • @ref: 67770
  • description: Planococcus citreus gene for 16S rRNA, partial sequence, strain: JCM 2535
  • accession: LC379148
  • length: 1473
  • database: nuccore
  • NCBI tax ID: 1373

GC content

@refGC-contentmethod
6777050.3thermal denaturation, midpoint method (Tm)
6777049fluorimetric

External links

@ref: 67770

culture collection no.: JCM 2535, ATCC 15234, CCM 2389, IAM 13051, NCIMB 1496, NCMB 1349

straininfo link

  • @ref: 114035
  • straininfo: 9207

Reference

@idauthorstitledoi/url
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
114035Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID9207.1