Strain identifier

BacDive ID: 1632

Type strain: Yes

Species: Bartonella schoenbuchensis

Strain Designation: E251, R1

Strain history: CIP <- 2003, C. Dehio, Basel Univ., Basel, Switzerland: strain R1

NCBI tax ID(s): 165694 (species)

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General

@ref: 5074

BacDive-ID: 1632

DSM-Number: 13525

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic, Gram-negative

description: Bartonella schoenbuchensis E251 is a microaerophile, mesophilic, Gram-negative bacterium that was isolated from blood of wild roe-deer.

NCBI tax id

  • NCBI tax id: 165694
  • Matching level: species

strain history

@refhistory
5074<- C. Dehio,Univ. Basel; R1
366462003, C. Dehio, Basel Univ., Basel, Switzerland: strain R1
122512CIP <- 2003, C. Dehio, Basel Univ., Basel, Switzerland: strain R1

doi: 10.13145/bacdive1632.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Hyphomicrobiales
  • family: Bartonellaceae
  • genus: Bartonella
  • species: Bartonella schoenbuchensis
  • full scientific name: Bartonella schoenbuchensis corrig. Dehio et al. 2001

  • synonyms

    • @ref: 20215
    • synonym: Bartonella schoenbuchii

@ref: 5074

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhizobiales

family: Bartonellaceae

genus: Bartonella

species: Bartonella schoenbuchensis

full scientific name: Bartonella schoenbuchensis Dehio et al. 2001

strain designation: E251, R1

type strain: yes

Morphology

cell morphology

@refgram stainconfidencecell shapemotility
69480negative99.965
122512negativerod-shapedno

colony morphology

  • @ref: 122512

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
5074COLUMBIA BLOOD AGAR (DSMZ Medium 429)yeshttps://mediadive.dsmz.de/medium/429Name: COLUMBIA BLOOD AGAR (DSMZ Medium 429) Composition: Horse blood 40.0 g/l Columbia agar base
36646MEDIUM 45 - for Columbia agar with sheep bloodyesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Sheepblood (100.000 ml)
122512CIP Medium 45yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=45

culture temp

@refgrowthtypetemperaturerange
5074positivegrowth35mesophilic
36646positivegrowth37mesophilic
122512positivegrowth30-41
122512nogrowth10psychrophilic
122512nogrowth15psychrophilic
122512nogrowth25mesophilic
122512nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 5074
  • oxygen tolerance: microaerophile

spore formation

@refspore formationconfidence
69481no100
69480no99.998

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose-builds acid from27082
68371sucrose-builds acid from17992
68371melibiose-builds acid from28053
68371lactose-builds acid from17716
68371maltose-builds acid from17306
68371cellobiose-builds acid from17057
68371salicin-builds acid from17814
68371esculin-builds acid from4853
68371arbutin-builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine-builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose-builds acid from16024
68371D-fructose-builds acid from15824
68371D-glucose-builds acid from17634
68371D-galactose-builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose-builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754
122512esculin-hydrolysis4853
122512hippurate-hydrolysis606565
122512nitrate-reduction17632
122512nitrite-reduction16301

antibiotic resistance

  • @ref: 122512
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: yes
  • is resistant: no

metabolite production

  • @ref: 122512
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
12251215688acetoin-
12251217234glucose-

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase-3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase-3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase-3.1.3.1
122512oxidase-
122512beta-galactosidase-3.2.1.23
122512alcohol dehydrogenase-1.1.1.1
122512gelatinase-
122512catalase+1.11.1.6
122512gamma-glutamyltransferase+2.3.2.2
122512lysine decarboxylase-4.1.1.18
122512ornithine decarboxylase-4.1.1.17
122512phenylalanine ammonia-lyase-4.3.1.24
122512tryptophan deaminase-
122512urease-3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
122512--++-+-----+--------

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
122512------------------------------------------------+/-

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentsampling dateisolation date
5074blood of wild roe-deerTuebingenGermanyDEUEurope
58995Deer bloodSchönbuchGermanyDEUEurope1999
122512Deer, bloodSchönbuchGermanyDEUEurope1999

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Caprinae (Sheep/Goat)
#Host Body Product#Fluids#Blood

taxonmaps

  • @ref: 69479
  • File name: preview.99_3284.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_5;96_247;97_656;98_2519;99_3284&stattab=map
  • Last taxonomy: Bartonella
  • 16S sequence: AJ278187
  • Sequence Identity:
  • Total samples: 180
  • soil counts: 21
  • aquatic counts: 30
  • animal counts: 125
  • plant counts: 4

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
50742Risk group (German classification)
1225122Risk group (French classification)

Sequence information

16S sequences

  • @ref: 5074
  • description: Bartonella schoenbuchii partial 16S rRNA gene, strain R1
  • accession: AJ278187
  • length: 1446
  • database: ena
  • NCBI tax ID: 687861

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Bartonella schoenbuchensis R1GCA_002022685chromosomencbi687861
66792Bartonella schoenbuchensis CCUG 50783GCA_902810545scaffoldncbi165694
66792Bartonella schoenbuchensis R1687861.4plasmidpatric687861
66792Bartonella schoenbuchensis strain CCUG 50783165694.3wgspatric165694
66792Bartonella schoenbuchensis R12773858026completeimg687861

Genome-based predictions

predictions

  • trait: spore-forming
  • prediction: no
  • confidence: 100
  • training_data: no

External links

@ref: 5074

culture collection no.: DSM 13525, CCUG 50783, CIP 107819, NCTC 13165

straininfo link

  • @ref: 71279
  • straininfo: 49482

literature

  • topic: Phylogeny
  • Pubmed-ID: 11491358
  • title: Bartonella schoenbuchii sp. nov., isolated from the blood of wild roe deer.
  • authors: Dehio C, Lanz C, Pohl R, Behrens P, Bermond D, Piemont Y, Pelz K, Sander A
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/00207713-51-4-1557
  • year: 2001
  • mesh: Animals, Bartonella/*classification/genetics/*isolation & purification/metabolism/pathogenicity, Base Sequence, DNA, Bacterial/genetics, Deer/*microbiology, Fatty Acids/analysis, Genes, Bacterial, Humans, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Species Specificity
  • topic2: Pathogenicity

Reference

@idauthorscataloguedoi/urltitle
5074Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 13525)https://www.dsmz.de/collection/catalogue/details/culture/DSM-13525
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
36646Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/5297
58995Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 50783)https://www.ccug.se/strain?id=50783
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
71279Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID49482.1StrainInfo: A central database for resolving microbial strain identifiers
122512Curators of the CIPCollection of Institut Pasteur (CIP 107819)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20107819