Strain identifier

BacDive ID: 16307

Type strain: Yes

Species: Streptomyces platensis

Strain history: KCC S-0325 <-- IPV 1942 <-- E. Baldacci 2501 FI.

NCBI tax ID(s): 249582 (subspecies)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 10123

BacDive-ID: 16307

DSM-Number: 41230

keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic, antibiotic compound production

description: Streptomyces platensis DSM 41230 is a spore-forming, mesophilic bacterium that produces antibiotic compounds and was isolated from soil.

NCBI tax id

  • NCBI tax id: 249582
  • Matching level: subspecies

strain history

@refhistory
10123<- R. E. Gordon, IMRU <- B. Camerino, Farmitalia, Fi 2501 <- E. Baldacci
67770KCC S-0325 <-- IPV 1942 <-- E. Baldacci 2501 FI.

doi: 10.13145/bacdive16307.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces platensis
  • full scientific name: Streptomyces platensis Tresner and Backus 1956 (Approved Lists 1980)

  • synonyms

    @refsynonym
    20215Streptomyces libani subsp. rufus
    20215Streptomyces hygroscopicus subsp. glebosus
    20215Streptomyces glebosus

@ref: 10123

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Kitasatosporales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces platensis

full scientific name: Streptomyces platensis Tresner and Backus 1956 emend. Nouioui et al. 2018

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480no93.043
69480100positive

Culture and growth conditions

culture medium

  • @ref: 10123
  • name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/65
  • composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
10123positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481yes100
69480yes100

compound production

@refcompound
10123libanomycin
67770Libanomycin

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
10123soilArgentinaARGMiddle and South America
67770SoilArgentinaARGMiddle and South America

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Safety information

risk assessment

  • @ref: 10123
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptomyces libani subsp. rufus strain CGMCC 4.1993 16S ribosomal RNA gene, partial sequenceHQ2444631371ena249582
20218Streptomyces libani subsp. rufus gene for 16S rRNA, partial sequenceAB122760565ena249582
20218Streptomyces libani subsp. rufus 16S rRNA gene, type strain LMG 20087AJ7813511470ena249582
20218Streptomyces libani subsp. rufus gene for 16S rRNA, partial sequence, strain: NBRC 15424AB1846711442ena249582

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptomyces libani subsp. rufus strain JCM 4325249582.4wgspatric249582
66792Streptomyces libani subsp. rufus strain NBRC 15424249582.3wgspatric249582

GC content

  • @ref: 67770
  • GC-content: 71.1
  • method: genome sequence analysis

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
motileno94.947no
gram-positiveyes91.415no
anaerobicno99.076no
aerobicyes93.575no
halophileno94.048no
spore-formingyes95.35no
glucose-utilyes88.48no
flagellatedno97.657no
thermophileno98.439yes
glucose-fermentno89.438no

External links

@ref: 10123

culture collection no.: DSM 41230, ATCC 23731, CMI 130, IMRU 3918, IPV 1942, JCM 4325, KCC S-0325, NCIB 10976, NRRL B-3445, CGMCC 4.1993, CMI 130779, IFO 15424, NBRC 15424, NCIMB 10976, VKM Ac-600

straininfo link

  • @ref: 85363
  • straininfo: 38204

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
10123Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 41230)https://www.dsmz.de/collection/catalogue/details/culture/DSM-41230
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
85363Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID38204.1StrainInfo: A central database for resolving microbial strain identifiers