Strain identifier

BacDive ID: 163057

Type strain: No

Species: Myxococcus stipitatus

Strain history: IAM 13956 <-- S. Yamanaka No. 21 (=AJ 12377).

NCBI tax ID(s): 83455 (species)

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General

@ref: 67770

BacDive-ID: 163057

keywords: 16S sequence, Bacteria

description: Myxococcus stipitatus JCM 21004 is a bacterium that was isolated from Riverside soil.

NCBI tax id

  • NCBI tax id: 83455
  • Matching level: species

strain history

  • @ref: 67770
  • history: IAM 13956 <-- S. Yamanaka No. 21 (=AJ 12377).

doi: 10.13145/bacdive163057.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Deltaproteobacteria
  • order: Myxococcales
  • family: Myxococcaceae
  • genus: Myxococcus
  • species: Myxococcus stipitatus
  • full scientific name: Myxococcus stipitatus Thaxter 1897 (Approved Lists 1980)

@ref: 67770

domain: Bacteria

phylum: Proteobacteria

class: Deltaproteobacteria

order: Myxococcales

family: Myxococcaceae

genus: Myxococcus

species: Myxococcus stipitatus

full scientific name: Myxococcus stipitatus Thaxter 1897

type strain: no

Culture and growth conditions

culture temp

  • @ref: 67770
  • growth: positive
  • type: growth
  • temperature: 30

Isolation, sampling and environmental information

isolation

  • @ref: 67770
  • sample type: Riverside soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_1929.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_211;96_740;97_863;98_1007;99_1929&stattab=map
  • Last taxonomy: Myxococcus
  • 16S sequence: AB218208
  • Sequence Identity:
  • Total samples: 1378
  • soil counts: 976
  • aquatic counts: 133
  • animal counts: 96
  • plant counts: 173

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
67770Myxococcus stipitatus gene for 16S rRNA, partial sequence, strain: NBRC 100069AB2182081461nuccore83455
124043Myxococcus stipitatus gene for 16S-23S rRNA internal transcribed spacer regions, partial sequence, strain: NBRC 100069.AB218238733nuccore83455

External links

@ref: 67770

culture collection no.: JCM 21004, AJ 12377, IAM 13956, NBRC 100069

straininfo link

  • @ref: 113825
  • straininfo: 200043

Reference

@idauthorstitledoi/url
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
113825Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID200043.1
124043Dr. Isabel Schober, Dr. Julia KoblitzData extracted from sequence databases, automatically matched based on designation and taxonomy