Strain identifier
BacDive ID: 162905
Type strain: 
Species: Sphaerotilus natans
Strain history: IAM 12068 <-- ATCC 15291 <-- Buckman Labs., Inc..
NCBI tax ID(s): 34103 (species)
version 8.1 (current version)
General
@ref: 67770
BacDive-ID: 162905
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Sphaerotilus natans JCM 20382 is a mesophilic bacterium that was isolated from Paper-mill slime.
NCBI tax id
- NCBI tax id: 34103
- Matching level: species
strain history
- @ref: 67770
- history: IAM 12068 <-- ATCC 15291 <-- Buckman Labs., Inc..
doi: 10.13145/bacdive162905.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Burkholderiales
- family: Comamonadaceae
- genus: Sphaerotilus
- species: Sphaerotilus natans
- full scientific name: Sphaerotilus natans Kützing 1833 (Approved Lists 1980)
@ref: 67770
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Burkholderiales
family: Comamonadaceae
genus: Sphaerotilus
species: Sphaerotilus natans
full scientific name: Sphaerotilus natans Ktzing 1833
type strain: no
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 25
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Paper-mill slime
taxonmaps
- @ref: 69479
- File name: preview.99_5154.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_1;96_2507;97_3061;98_3841;99_5154&stattab=map
- Last taxonomy: Sphaerotilus natans subclade
- 16S sequence: AB680432
- Sequence Identity:
- Total samples: 24715
- soil counts: 1888
- aquatic counts: 16039
- animal counts: 5244
- plant counts: 1544
Sequence information
16S sequences
- @ref: 67770
- description: Sphaerotilus natans gene for 16S rRNA, partial sequence, strain: NBRC 13543
- accession: AB680432
- length: 1450
- database: ena
- NCBI tax ID: 34103
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Sphaerotilus natans JCM 20382 | GCA_019655895 | scaffold | ncbi | 34103 |
| 66792 | Sphaerotilus natans strain JCM 20382 | 34103.7 | wgs | patric | 34103 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| flagellated | yes | 75.904 | no |
| gram-positive | no | 99.027 | no |
| anaerobic | no | 98.262 | no |
| aerobic | yes | 90.19 | no |
| halophile | no | 95.377 | no |
| spore-forming | no | 94.855 | no |
| thermophile | no | 96.318 | no |
| glucose-util | yes | 73.475 | no |
| glucose-ferment | no | 90.525 | no |
| motile | yes | 86.921 | no |
External links
@ref: 67770
culture collection no.: JCM 20382, ATCC 15291, IAM 12068, IFO 13543, NBRC 13543
straininfo link
- @ref: 113692
- straininfo: 36326
literature
| Pubmed-ID | title | authors | journal | year | mesh | topic | DOI | topic2 |
|---|---|---|---|---|---|---|---|---|
| 2993216 | Antitumor activity of Sphaerotilus natans and its slime fraction in mice. | Mifuchi I, Masuzawa T, Koike M, Shimizu T, Yanagihara Y | Jpn J Cancer Res | 1985 | Animals, Carcinoma, Ehrlich Tumor/*therapy, Cell Fractionation, Gram-Negative Aerobic Bacteria/*immunology, Macrophages/immunology, Male, Mice, Mice, Inbred Strains, Silicon Dioxide/pharmacology | |||
| 8573492 | Phylogeny of the Sphaerotilus-Leptothrix group inferred from morphological comparisons, genomic fingerprinting, and 16S ribosomal DNA sequence analyses. | Siering PL, Ghiorse WC | Int J Syst Bacteriol | 1996 | Base Sequence, DNA Fingerprinting, DNA, Ribosomal/*genetics, Genome, Bacterial, Gram-Negative Aerobic Bacteria/*classification/genetics/ultrastructure, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/*genetics | Phylogeny | 10.1099/00207713-46-1-173 | Genetics |
| 9872774 | Morphological and biochemical properties of a Sphaerotilus sp. Isolated from paper mill slimes. | Pellegrin V, Juretschko S, Wagner M, Cottenceau G | Appl Environ Microbiol | 1999 | Base Sequence, DNA Primers/genetics, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Gram-Negative Aerobic Bacteria/genetics/*metabolism/*ultrastructure, Hydrogen-Ion Concentration, Microscopy, Electron, Scanning, Molecular Sequence Data, Paper, Phylogeny, Polymerase Chain Reaction | Phylogeny | 10.1128/AEM.65.1.156-162.1999 | Genetics |
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |
| 113692 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID36326.1 |