Name: Sphaerotilus natans JCM 20382
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 162905

Type strain:

Species: Sphaerotilus natans

Culture col. no.: JCM 20382, ATCC 15291, IAM 12068, IFO 13543, NBRC 13543

Strain history: IAM 12068 <-- ATCC 15291 <-- Buckman Labs., Inc..

NCBI tax ID(s): 34103 (species)

SI-ID 36326

ATCC 15291, IFO 13543, NCIMB 11196, IAM12068, KCTC 1629, NBRC 13543, BCRC 10775, CCRC 10775, JCM 20382

Special Collections

Section

Sphaerotilus natans JCM 20382 is a mesophilic, Gram-negative bacterium that was isolated from Paper-mill slime.

Gram-negative
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Sphaerotilaceae*
	Genus	*Sphaerotilus*
	Species	**Sphaerotilus natans**
	Full Scientific Name (LPSN)	Sphaerotilus natans Kützing 1833 (Approved Lists 1980)

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.5

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	25 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Ability of spore formation

no Confidence in %90.93

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Paper-mill slime
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence AB680432 (>99% sequence identity) for Sphaerotilus natans subclade from Microbeatlas

Aquatic Samples	16039
Soil Samples	1888
Animal Samples	5244
Plant Samples	1544
Total Samples	24715

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Sphaerotilus natans gene for 16S rRNA, partial sequence, strain: NBRC 13543	AB680432	1450	GenBank ENA	34103 tax ID
[Ref.: #124043]	Sphaerotilus natans gene for 16S rRNA, partial sequence.	AB072236	588	GenBank ENA	34103 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Sphaerotilus natans JCM 20382	GCA_019655895	scaffold	GenBank ENA	34103 tax ID	*
[Ref.: #66792]	Sphaerotilus natans strain JCM 20382	34103.7	wgs	PATRIC	34103 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Sphaerotilus natans JCM 20382 NCBI: GCA_019655895.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	99.5	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	94.45	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	74.871	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	90.93	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	97.279	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	77.293	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 20382, ATCC 15291, IAM 12068, IFO 13543, NBRC 13543

[Ref.: #113692]

SI-ID 36326

Literature:

	Title	Authors	Journal	DOI	Year
Phylogeny	Morphological and biochemical properties of a Sphaerotilus sp. Isolated from paper mill slimes.	Pellegrin V, Juretschko S, Wagner M, Cottenceau G	Appl Environ Microbiol	10.1128/AEM.65.1.156-162.1999	1999	*
Phylogeny	Phylogeny of the Sphaerotilus-Leptothrix group inferred from morphological comparisons, genomic fingerprinting, and 16S ribosomal DNA sequence analyses.	Siering PL, Ghiorse WC	Int J Syst Bacteriol	10.1099/00207713-46-1-173	1996	*
	Antitumor activity of Sphaerotilus natans and its slime fraction in mice.	Mifuchi I, Masuzawa T, Koike M, Shimizu T, Yanagihara Y	Jpn J Cancer Res		1985	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#113692

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID36326.1 )

#124043

Dr. Isabel Schober, Dr. Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

* These data were automatically processed and therefore are not curated

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