Strain identifier

BacDive ID: 162818

Type strain: No

Species: Pediococcus pentosaceus

Strain history: C. Kaneuchi <-- K. Komagata <-- S. Tanasupawat N-37.

NCBI tax ID(s): 1255 (species)

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General

@ref: 67770

BacDive-ID: 162818

keywords: 16S sequence, Bacteria

description: Pediococcus pentosaceus JCM 2024 is a bacterium that was isolated from Phak-sain-dong .

NCBI tax id

  • NCBI tax id: 1255
  • Matching level: species

strain history

  • @ref: 67770
  • history: C. Kaneuchi <-- K. Komagata <-- S. Tanasupawat N-37.

doi: 10.13145/bacdive162818.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Lactobacillaceae
  • genus: Pediococcus
  • species: Pediococcus pentosaceus
  • full scientific name: Pediococcus pentosaceus Mees 1934 (Approved Lists 1980)

@ref: 67770

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Lactobacillaceae

genus: Pediococcus

species: Pediococcus pentosaceus

full scientific name: Pediococcus pentosaceus Mees 1934

type strain: no

Culture and growth conditions

culture temp

  • @ref: 67770
  • growth: positive
  • type: growth
  • temperature: 30

Isolation, sampling and environmental information

isolation

  • @ref: 67770
  • sample type: Phak-sain-dong (pickled vegetables)

taxonmaps

  • @ref: 69479
  • File name: preview.99_1917.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_45;96_382;97_430;98_490;99_1917&stattab=map
  • Last taxonomy: Pediococcus
  • 16S sequence: LC153551
  • Sequence Identity:
  • Total samples: 32050
  • soil counts: 2103
  • aquatic counts: 2228
  • animal counts: 26184
  • plant counts: 1535

Sequence information

16S sequences

  • @ref: 67770
  • description: Pediococcus pentosaceus gene for 16S ribosomal RNA, partial sequence, strain: JCM 2024
  • accession: LC153551
  • length: 1518
  • database: nuccore
  • NCBI tax ID: 1255

GC content

  • @ref: 67770
  • GC-content: 37.5

External links

@ref: 67770

culture collection no.: JCM 2024, TISTR 415

straininfo link

  • @ref: 113626
  • straininfo: 63576

Reference

@idauthorstitledoi/url
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
113626Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID63576.1