General

@ref: 67770

BacDive-ID: 162684

keywords: 16S sequence, Bacteria, thermophilic

description: Thermogutta hypogea JCM 19991 is a thermophilic bacterium that was isolated from Deep-subsurface gold mine fracture water in Beatrix mine.

NCBI tax id

• NCBI tax id: 1331911
• Matching level: species

strain history

• @ref: 67770
• history: G. Slobodkina SBP2.

doi: 10.13145/bacdive162684.20230509.8.1

Name and taxonomic classification

LPSN

• @ref: 20215
• description: domain/bacteria
• keyword: phylum/planctomycetota
• domain: Bacteria
• phylum: Planctomycetota
• class: Planctomycetia
• order: Pirellulales
• family: Thermoguttaceae
• genus: Thermogutta
• species: Thermogutta hypogea
• full scientific name: Thermogutta hypogea Slobodkina et al. 2015

@ref: 67770

domain: Bacteria

phylum: Planctomycetes

class: Planctomycetia

order: Pirellulales

family: Thermoguttaceae

genus: Thermogutta

species: Thermogutta hypogea

full scientific name: Thermogutta hypogea Slobodkina et al. 2015

type strain: yes

Culture and growth conditions

culture temp

• @ref: 67770
• growth: positive
• type: growth
• temperature: 50
• range: thermophilic

Isolation, sampling and environmental information

isolation

• @ref: 67770
• sample type: Deep-subsurface gold mine fracture water in Beatrix mine
• geographic location: Free State
• country: South Africa
• origin.country: ZAF
• continent: Africa

taxonmaps

• @ref: 69479
• File name: preview.99_129296.png
• url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3731;96_17816;97_21955;98_51191;99_129296&stattab=map
• Last taxonomy: Thermogutta hypogea subclade
• 16S sequence: KC867695
• Sequence Identity:
• Total samples: 102
• soil counts: 19
• aquatic counts: 79
• animal counts: 4

Sequence information

16S sequences

• @ref: 67770
• description: Thermogutta hypogea strain SBP2 16S ribosomal RNA gene, partial sequence
• accession: KC867695
• length: 1445
• database: ena
• NCBI tax ID: 1331911

GC content

• @ref: 67770
• GC-content: 66.6
• method: thermal denaturation, midpoint method (Tm)

External links

@ref: 67770

culture collection no.: JCM 19991, VKM B-2782

literature

• topic: Phylogeny
• Pubmed-ID: 25479950
• title: Thermogutta terrifontis gen. nov., sp. nov. and Thermogutta hypogea sp. nov., thermophilic anaerobic representatives of the phylum Planctomycetes.
• authors: Slobodkina GB, Kovaleva OL, Miroshnichenko ML, Slobodkin AI, Kolganova TV, Novikov AA, van Heerden E, Bonch-Osmolovskaya EA
• journal: Int J Syst Evol Microbiol
• DOI: 10.1099/ijs.0.000009
• year: 2014
• mesh: Bacteria/*classification/genetics/isolation & purification, Bacterial Typing Techniques, DNA, Bacterial/genetics, Fatty Acids/chemistry, Hot Springs/*microbiology, Mining, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Russia, Sequence Analysis, DNA, South Africa, Water Microbiology
• topic2: Genetics

Reference