Strain identifier

BacDive ID: 162602

Type strain: No

Species: Stenotrophomonas maltophilia

Strain history: K. Suzuki KS 0002 <-- IAM 1554 <-- K. Komagata YF-3.

NCBI tax ID(s): 40324 (species)

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General

@ref: 67770

BacDive-ID: 162602

keywords: 16S sequence, Bacteria

description: Stenotrophomonas maltophilia JCM 1976 is a bacterium that was isolated from Japanese paddy.

NCBI tax id

  • NCBI tax id: 40324
  • Matching level: species

strain history

  • @ref: 67770
  • history: K. Suzuki KS 0002 <-- IAM 1554 <-- K. Komagata YF-3.

doi: 10.13145/bacdive162602.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Lysobacterales
  • family: Lysobacteraceae
  • genus: Stenotrophomonas
  • species: Stenotrophomonas maltophilia
  • full scientific name: Stenotrophomonas maltophilia (Hugh 1981 ex Hugh and Ryschenkow 1961) Palleroni and Bradbury 1993

  • synonyms

    @refsynonym
    20215Xanthomonas maltophilia
    20215Pseudomonas maltophilia
    20215Stenotrophomonas africana

@ref: 67770

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Lysobacterales

family: Lysobacteraceae

genus: Stenotrophomonas

species: Stenotrophomonas maltophilia

full scientific name: Stenotrophomonas maltophilia (Hugh 1981) Palleroni and Bradbury 1993

type strain: no

Culture and growth conditions

culture temp

  • @ref: 67770
  • growth: positive
  • type: growth
  • temperature: 30

Physiology and metabolism

observation

  • @ref: 67770
  • observation: quinones: Q-8

Isolation, sampling and environmental information

isolation

  • @ref: 67770
  • sample type: Japanese paddy

taxonmaps

  • @ref: 69479
  • File name: preview.99_186.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_17;96_26;97_27;98_30;99_186&stattab=map
  • Last taxonomy: Stenotrophomonas
  • 16S sequence: LC379123
  • Sequence Identity:
  • Total samples: 10451
  • soil counts: 1650
  • aquatic counts: 1647
  • animal counts: 6387
  • plant counts: 767

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
67770Stenotrophomonas maltophilia gene for 16S rRNA, partial sequence, strain: JCM 1976LC3791231469nuccore40324
124043Stenotrophomonas maltophilia gene for 16S ribosomal RNA, partial sequence, strain: JCM 1976.AB2945541541nuccore40324
124043Stenotrophomonas maltophilia gene for 16S rRNA, partial sequence, strain: NBRC 12692.AB6803211472nuccore40324
124043Stenotrophomonas maltophilia strain BCRC 12495 16S-23S ribosomal RNA intergenic spacer, complete sequence.EU014540497nuccore40324

GC content

  • @ref: 67770
  • GC-content: 66.9

External links

@ref: 67770

culture collection no.: JCM 1976, ATCC 17806, BCRC 12495, IAM 1554, IFO 12692, LMG 959, NBRC 12692

straininfo link

  • @ref: 113501
  • straininfo: 6102

literature

  • topic: Metabolism
  • Pubmed-ID: 19902207
  • title: Continuous 2-Keto-L-gulonic acid fermentation by mixed culture of Ketogulonicigenium vulgare DSM 4025 and Bacillus megaterium or Xanthomonas maltophilia.
  • authors: Takagi Y, Sugisawa T, Hoshino T
  • journal: Appl Microbiol Biotechnol
  • DOI: 10.1007/s00253-009-2312-1
  • year: 2009
  • mesh: Bacillus megaterium/metabolism, Coculture Techniques, Fermentation, Rhodobacteraceae/*metabolism, Sorbose/metabolism, Stenotrophomonas maltophilia/*metabolism, Sugar Acids/*metabolism

Reference

@idauthorstitledoi/url
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
113501Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID6102.1
124043Dr. Isabel Schober, Dr. Julia KoblitzData extracted from sequence databases, automatically matched based on designation and taxonomy