Strain identifier
BacDive ID: 162484
Type strain: 
Species: Caldibacillus kokeshiiformis
Strain history: K. Sakai MO-04.
NCBI tax ID(s): 1247960 (subspecies)
version 9.2 (current version)
General
@ref: 67770
BacDive-ID: 162484
keywords: genome sequence, 16S sequence, Bacteria, spore-forming, thermophilic
description: Caldibacillus kokeshiiformis JCM 19325 is a spore-forming, thermophilic bacterium that was isolated from Marine animal resources compost.
NCBI tax id
- NCBI tax id: 1247960
- Matching level: subspecies
strain history
- @ref: 67770
- history: K. Sakai MO-04.
doi: 10.13145/bacdive162484.20241212.9.2
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Bacillaceae
- genus: Caldibacillus
- species: Caldibacillus kokeshiiformis
- full scientific name: Caldibacillus kokeshiiformis (Poudel et al. 2014) Gupta et al. 2020
synonyms
@ref synonym 20215 Pallidibacillus thermolactis subsp. kokeshiiformis 20215 Bacillus kokeshiiformis
@ref: 67770
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Caryophanales
family: Bacillaceae
genus: Caldibacillus
species: Caldibacillus kokeshiiformis
full scientific name: Caldibacillus kokeshiiformis (Poudel et al. 2014) Gupta et al. 2020
type strain: yes
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 50
Physiology and metabolism
spore formation
- @ref: 69480
- spore formation: yes
- confidence: 90.927
observation
- @ref: 67770
- observation: quinones: MK-7
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Marine animal resources (MAR) compost
- country: Japan
- origin.country: JPN
- continent: Asia
taxonmaps
- @ref: 69479
- File name: preview.99_11038.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_5496;97_6627;98_8230;99_11038&stattab=map
- Last taxonomy: Bacillus
- 16S sequence: JX848633
- Sequence Identity:
- Total samples: 33412
- soil counts: 15537
- aquatic counts: 4000
- animal counts: 9415
- plant counts: 4460
Sequence information
16S sequences
- @ref: 67770
- description: Pallidibacillus thermolactis subsp. kokeshiiformis strain MO-04 16S ribosomal RNA gene, partial sequence
- accession: JX848633
- length: 1454
- database: nuccore
- NCBI tax ID: 1247960
Genome sequences
- @ref: 66792
- description: Caldibacillus kokeshiiformis KCTC 33163
- accession: GCA_025660375
- assembly level: scaffold
- database: ncbi
- NCBI tax ID: 1247960
GC content
- @ref: 67770
- GC-content: 33.4
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 80.108 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 95.7 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 74.474 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 90.927 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 77.842 | no |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | yes | 82.954 | no |
External links
@ref: 67770
culture collection no.: JCM 19325, KCTC 33163
literature
- topic: Phylogeny
- Pubmed-ID: 24835163
- title: Thermotolerant Bacillus kokeshiiformis sp. nov. isolated from marine animal resources compost.
- authors: Poudel P, Miyamoto H, Miyamoto H, Okugawa Y, Tashiro Y, Sakai K
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.059329-0
- year: 2014
- mesh: Bacillus/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Fertilizers/microbiology, Japan, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seafood, Sequence Analysis, DNA, *Soil Microbiology
- topic2: Genetics
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |