Name: Caldibacillus kokeshiiformis JCM 19325
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 162484

Type strain:

Species: Caldibacillus kokeshiiformis

Culture col. no.: JCM 19325, KCTC 33163

Strain history: K. Sakai MO-04.

NCBI tax ID(s): 1247960 (species)

Section

Caldibacillus kokeshiiformis JCM 19325 is a thermophilic bacterium that was isolated from Marine animal resources compost.

thermophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Bacillaceae*
	Genus	*Caldibacillus*
	Species	**Caldibacillus kokeshiiformis**
	Full Scientific Name (LPSN)	Caldibacillus kokeshiiformis (Poudel et al. 2014) Gupta et al. 2020

	Synonym	Pallidibacillus thermolactis subsp. kokeshiiformis
	Synonym	Bacillus kokeshiiformis

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	50 °C

[Ref.: #67770]

Temperature range

thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: MK-7

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Marine animal resources (MAR) compost
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence JX848633 (>99% sequence identity) for Bacillus from Microbeatlas

Aquatic Samples	4000
Soil Samples	15537
Animal Samples	9415
Plant Samples	4460
Total Samples	33412

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Bacillus kokeshiiformis strain MO-04 16S ribosomal RNA gene, partial sequence	JX848633	1454	ENA	1247960 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Caldibacillus kokeshiiformis KCTC 33163	GCA_025660375	scaffold	GenBank	1247960 tax ID	*

[Ref.: #67770]

GC-content

33.4 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Caldibacillus kokeshiiformis KCTC 33163 NCBI: GCA_025660375.1
[Ref.: #69480]	motile	yes	90.603	no
[Ref.: #69480]	flagellated	yes	82.271	no
[Ref.: #69480]	gram-positive	yes	92.502	no
[Ref.: #69480]	anaerobic	no	97.961	no
[Ref.: #69480]	aerobic	yes	89.872	no
[Ref.: #69480]	halophile	yes	76.016	no
[Ref.: #69480]	spore-forming	yes	95.075	no
[Ref.: #69480]	glucose-ferment	no	89.076	no
[Ref.: #69480]	thermophile	yes	61.405	no
[Ref.: #69480]	glucose-util	yes	88.044	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 19325, KCTC 33163

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Thermotolerant Bacillus kokeshiiformis sp. nov. isolated from marine animal resources compost.	Poudel P, Miyamoto H, Miyamoto H, Okugawa Y, Tashiro Y, Sakai K	Int J Syst Evol Microbiol	10.1099/ijs.0.059329-0	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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Caldibacillus kokeshiiformis KCTC 33163

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