Strain identifier
BacDive ID: 162425
Type strain: 
Species: Oceanospirillum sanctuarii
Strain history: P. Anil Kumar AK56.
NCBI tax ID(s): 1434821 (species)
version 9.1 (current version)
General
@ref: 67770
BacDive-ID: 162425
keywords: genome sequence, 16S sequence, Bacteria, motile
description: Oceanospirillum sanctuarii JCM 19193 is a motile bacterium that was isolated from Sediment sample at the Coringa Wildlife Sanctuary.
NCBI tax id
- NCBI tax id: 1434821
- Matching level: species
strain history
- @ref: 67770
- history: P. Anil Kumar AK56.
doi: 10.13145/bacdive162425.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Oceanospirillales
- family: Oceanospirillaceae
- genus: Oceanospirillum
- species: Oceanospirillum sanctuarii
- full scientific name: Oceanospirillum sanctuarii Sidhu et al. 2017
@ref: 67770
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Oceanospirillales
family: Oceanospirillaceae
genus: Oceanospirillum
species: Oceanospirillum sanctuarii
full scientific name: Oceanospirillum sanctuarii Sidhu et al. 2017
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 100
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 30
Physiology and metabolism
spore formation
- @ref: 69480
- spore formation: no
- confidence: 92.77
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Sediment sample at the Coringa Wildlife Sanctuary
- country: India
- origin.country: IND
- continent: Asia
taxonmaps
- @ref: 69479
- File name: preview.99_85828.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_240;96_9922;97_11970;98_14718;99_85828&stattab=map
- Last taxonomy: Oceanospirillum sanctuarii
- 16S sequence: KF728826
- Sequence Identity:
- Total samples: 547
- soil counts: 13
- aquatic counts: 472
- animal counts: 57
- plant counts: 5
Sequence information
16S sequences
- @ref: 67770
- description: Oceanospirillum sanctuarii 16S ribosomal RNA gene, partial sequence
- accession: KF728826
- length: 1488
- database: nuccore
- NCBI tax ID: 1434821
Genome sequences
- @ref: 67770
- description: Oceanospirillum sanctuarii AK56
- accession: GCA_002150805
- assembly level: contig
- database: ncbi
- NCBI tax ID: 1434821
GC content
- @ref: 67770
- GC-content: 50.3
- method: thermal denaturation, midpoint method (Tm)
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 100 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 95.892 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 78.016 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 92.77 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 98.406 | yes |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | yes | 84.096 | no |
External links
@ref: 67770
culture collection no.: JCM 19193, KCTC 52973, MTCC 12005
literature
- topic: Phylogeny
- Pubmed-ID: 28829018
- title: Oceanospirillum sanctuarii sp. nov., isolated from a sediment sample.
- authors: Sidhu C, Thakur S, Sharma G, Tanuku NRS, Pinnaka AK
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.002132
- year: 2017
- mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Geologic Sediments/*microbiology, India, Nucleic Acid Hybridization, Oceanospirillaceae/*classification/genetics/isolation & purification, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA
- topic2: Transcriptome
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |