Strain identifier
BacDive ID: 162407
Type strain: 
Species: Pseudomaricurvus alkylphenolicus
Strain history: H. Iwaki KU41G.
NCBI tax ID(s): 1306991 (species)
version 8.1 (current version)
General
@ref: 67770
BacDive-ID: 162407
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative
description: Pseudomaricurvus alkylphenolicus JCM 19135 is a mesophilic, Gram-negative bacterium that was isolated from Seawater from the coastal region of Chichi-jima Island of Ogasawara Islands.
NCBI tax id
- NCBI tax id: 1306991
- Matching level: species
strain history
- @ref: 67770
- history: H. Iwaki KU41G.
doi: 10.13145/bacdive162407.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Cellvibrionales
- family: Cellvibrionaceae
- genus: Pseudomaricurvus
- species: Pseudomaricurvus alkylphenolicus
- full scientific name: Pseudomaricurvus alkylphenolicus Iwaki et al. 2014
@ref: 67770
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Cellvibrionales
family: Cellvibrionaceae
genus: Pseudomaricurvus
species: Pseudomaricurvus alkylphenolicus
full scientific name: Pseudomaricurvus alkylphenolicus Iwaki et al. 2014
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.988
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 25
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69480 | no | 99.933 |
| 69481 | no | 100 |
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Seawater from the coastal region of Chichi-jima Island of Ogasawara Islands
- country: Japan
- origin.country: JPN
- continent: Asia
Sequence information
16S sequences
- @ref: 67770
- description: Pseudomaricurvus alkylphenolicus gene for 16S ribosomal RNA, partial sequence
- accession: AB809161
- length: 1458
- database: ena
- NCBI tax ID: 1306991
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Pseudomaricurvus alkylphenolicus strain KCTC 32386 | 1306991.3 | wgs | patric | 1306991 |
| 66792 | Pseudomaricurvus alkylphenolicus KCTC 32386 | 2887179270 | draft | img | 1306991 |
| 67770 | Pseudomaricurvus alkylphenolicus KCTC 32386 | GCA_011683955 | contig | ncbi | 1306991 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | yes | 85.346 | no |
| gram-positive | no | 98.734 | no |
| anaerobic | no | 96.991 | no |
| halophile | yes | 56.737 | no |
| spore-forming | no | 93.83 | no |
| thermophile | no | 98.492 | yes |
| glucose-util | yes | 87.203 | no |
| aerobic | yes | 88.215 | no |
| flagellated | yes | 80.736 | no |
| glucose-ferment | no | 87.087 | no |
External links
@ref: 67770
culture collection no.: JCM 19135, KCTC 32386
literature
- topic: Phylogeny
- Pubmed-ID: 24051555
- title: Isolation and characterization of marine nonylphenol-degrading bacteria and description of Pseudomaricurvus alkylphenolicus gen. nov., sp. nov.
- authors: Iwaki H, Fujioka M, Hasegawa Y
- journal: Curr Microbiol
- DOI: 10.1007/s00284-013-0455-x
- year: 2013
- mesh: Base Composition, DNA, Bacterial/chemistry/genetics, Gammaproteobacteria/*classification/genetics/isolation & purification/*metabolism/ultrastructure, Phenols/*metabolism, Phenotype, Phylogeny, RNA, Bacterial, RNA, Ribosomal, 16S
- topic2: Metabolism
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |