Strain identifier
BacDive ID: 162297
Type strain: 
Species: Corallincola platygyrae
Strain history: Y. Fu JLT2006.
NCBI tax ID(s): 1193278 (species)
version 8.1 (current version)
General
@ref: 67770
BacDive-ID: 162297
keywords: 16S sequence, Bacteria, psychrophilic
description: Corallincola platygyrae JCM 18796 is a psychrophilic bacterium that was isolated from Coral Platygyra carnosus at Moon Island inside the Hoi Ha Wan Marine Park.
NCBI tax id
- NCBI tax id: 1193278
- Matching level: species
strain history
- @ref: 67770
- history: Y. Fu JLT2006.
doi: 10.13145/bacdive162297.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Alteromonadales
- family: Psychromonadaceae
- genus: Corallincola
- species: Corallincola platygyrae
- full scientific name: Corallincola platygyrae Li et al. 2017
synonyms
- @ref: 20215
- synonym: Coralslurrinella hongkonensis
@ref: 67770
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Alteromonadales
family: Psychromonadaceae
genus: Corallincola
species: Corallincola platygyrae
full scientific name: Corallincola platygyrae Li et al. 2017
type strain: yes
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 20
- range: psychrophilic
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Coral Platygyra carnosus at Moon Island inside the Hoi Ha Wan Marine Park
- host species: Platygyra carnosus
- geographic location: Hong Kong
- country: China
- origin.country: CHN
- continent: Asia
taxonmaps
- @ref: 69479
- File name: preview.99_50331.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_267;96_22702;97_28390;98_36176;99_50331&stattab=map
- Last taxonomy: Corallincola platygyrae subclade
- 16S sequence: JN169121
- Sequence Identity:
- Total samples: 143
- soil counts: 2
- aquatic counts: 113
- animal counts: 23
- plant counts: 5
Sequence information
16S sequences
- @ref: 67770
- description: Corallincola platygyrae strain JLT2006 16S ribosomal RNA gene, partial sequence
- accession: JN169121
- length: 1469
- database: ena
- NCBI tax ID: 1193278
GC content
- @ref: 67770
- GC-content: 40.3
- method: high performance liquid chromatography (HPLC)
External links
@ref: 67770
culture collection no.: JCM 18796, CGMCC 1.10992
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 24022396 | Coralslurrinella hongkonensis gen. nov., sp. nov., a novel bacterium in the family Psychromonadaceae, isolated from the coral Platygyra carnosus. | Li Y, Chan Y, Fu Y, Zhang R, Chiu JM | Antonie Van Leeuwenhoek | 10.1007/s10482-013-0017-z | 2013 | Animals, Anthozoa/*microbiology, Bacterial Typing Techniques, Base Composition, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Flagella/physiology, Gammaproteobacteria/*classification/genetics/*isolation & purification/physiology, Hong Kong, Locomotion, Molecular Sequence Data, Phospholipids/analysis, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA | Genetics |
| Phylogeny | 31289978 | Corallincola luteus sp. nov., a marine bacterium isolated from surface sediment of Bohai Sea of China. | Ren Q, Yang X, Yu M, Tian X, Li B, Meng Z, Wu Y, Liu J, Zhang XH | Antonie Van Leeuwenhoek | 10.1007/s10482-019-01295-3 | 2019 | Aquatic Organisms/*classification/*isolation & purification, Bacterial Typing Techniques, Base Composition, China, Gammaproteobacteria/*classification/*isolation & purification, Geologic Sediments/*microbiology, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/microbiology | Enzymology |
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |