Strain identifier

BacDive ID: 162089

Type strain: No

Species: Noviherbaspirillum autotrophicum

Strain history: S. Ishii TSO23-1.

NCBI tax ID(s): 709839 (species)

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General

@ref: 67770

BacDive-ID: 162089

keywords: 16S sequence, Bacteria, mesophilic

description: Noviherbaspirillum autotrophicum JCM 17720 is a mesophilic bacterium that was isolated from Rice paddy soil under N2O-reducing conditions.

NCBI tax id

  • NCBI tax id: 709839
  • Matching level: species

strain history

  • @ref: 67770
  • history: S. Ishii TSO23-1.

doi: 10.13145/bacdive162089.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Oxalobacteraceae
  • genus: Noviherbaspirillum
  • species: Noviherbaspirillum autotrophicum
  • full scientific name: Noviherbaspirillum autotrophicum Ishii et al. 2017

@ref: 67770

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Oxalobacteraceae

genus: Noviherbaspirillum

species: Noviherbaspirillum autotrophicum

full scientific name: Noviherbaspirillum autotrophicum Ishii et al. 2017

type strain: no

Culture and growth conditions

culture temp

  • @ref: 67770
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 67770
  • sample type: Rice paddy soil under N2O-reducing conditions
  • geographic location: Tokyo
  • country: Japan
  • origin.country: JPN
  • continent: Asia

taxonmaps

  • @ref: 69479
  • File name: preview.99_17015.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_12;96_3405;97_4180;98_5341;99_17015&stattab=map
  • Last taxonomy: Noviherbaspirillum
  • 16S sequence: AB545624
  • Sequence Identity:
  • Total samples: 70
  • soil counts: 45
  • aquatic counts: 4
  • animal counts: 7
  • plant counts: 14

Sequence information

16S sequences

  • @ref: 67770
  • description: Herbaspirillum sp. TSO23-1 gene for 16S ribosomal RNA, partial sequence
  • accession: AB545624
  • length: 1453
  • database: ena
  • NCBI tax ID: 709839

External links

@ref: 67770

culture collection no.: JCM 17720

Reference

@idauthorstitledoi/url
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/