Strain identifier

BacDive ID: 162035

Type strain: No

Species: Sphingomonas sp.

Strain history: C. N. Seong 01SU4-P.

NCBI tax ID(s): 28214 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
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General

@ref: 67770

BacDive-ID: 162035

keywords: 16S sequence, Bacteria, mesophilic

description: Sphingomonas sp. JCM 17541 is a mesophilic bacterium that was isolated from Fresh water from Woopo.

NCBI tax id

  • NCBI tax id: 28214
  • Matching level: species

strain history

  • @ref: 67770
  • history: C. N. Seong 01SU4-P.

doi: 10.13145/bacdive162035.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Sphingomonadales
  • family: Sphingomonadaceae
  • genus: Sphingomonas
  • species: Sphingomonas sp.
  • full scientific name: Sphingomonas Yabuuchi et al. 1990

@ref: 67770

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Sphingomonadales

family: Sphingomonadaceae

genus: Sphingomonas

species: Sphingomonas sp.

full scientific name: Sphingomonas sp.

type strain: no

Culture and growth conditions

culture temp

  • @ref: 67770
  • growth: positive
  • type: growth
  • temperature: 25
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 67770
  • sample type: Fresh water from Woopo
  • country: Republic of Korea
  • origin.country: KOR
  • continent: Asia

taxonmaps

  • @ref: 69479
  • File name: preview.99_112017.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_20;96_10170;97_12277;98_75964;99_112017&stattab=map
  • Last taxonomy: Sphingomonas lacunae subclade
  • 16S sequence: HQ436496
  • Sequence Identity:
  • Total samples: 1671
  • soil counts: 60
  • aquatic counts: 1450
  • animal counts: 77
  • plant counts: 84

Sequence information

16S sequences

  • @ref: 67770
  • description: Sphingomonas sp. enrichment culture clone 01SU4-P 16S ribosomal RNA gene, partial sequence
  • accession: HQ436496
  • length: 1415
  • database: ena
  • NCBI tax ID: 940132

External links

@ref: 67770

culture collection no.: JCM 17541, KCTC 23327

Reference

@idauthorstitledoi/url
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/