Strain identifier
BacDive ID: 162027
Type strain:
Species: Sphingobium sp.
Strain history: E. Masai SYK-6 <-- Y. Katayama <-- Y. Yamasaki.
NCBI tax ID(s): 1113922 (species)
version 8.1 (current version)
General
@ref: 67770
BacDive-ID: 162027
keywords: 16S sequence, Bacteria, mesophilic
description: Sphingobium sp. JCM 17495 is a mesophilic bacterium that was isolated from Pond for the treatment of waste liquor from a kraft pulp mill.
NCBI tax id
- NCBI tax id: 1113922
- Matching level: species
strain history
- @ref: 67770
- history: E. Masai SYK-6 <-- Y. Katayama <-- Y. Yamasaki.
doi: 10.13145/bacdive162027.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Sphingomonadales
- family: Sphingomonadaceae
- genus: Sphingobium
- species: Sphingobium sp.
- full scientific name: Sphingobium Takeuchi et al. 2001
@ref: 67770
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Sphingomonadales
family: Sphingomonadaceae
genus: Sphingobium
species: Sphingobium sp.
full scientific name: Sphingobium sp.
type strain: no
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Pond for the treatment of waste liquor from a kraft pulp mill
- geographic location: Iwakuni, Yamaguchi Pref.
- country: Japan
- origin.country: JPN
- continent: Asia
taxonmaps
- @ref: 69479
- File name: preview.99_6505.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_20;96_3077;97_3777;98_4799;99_6505&stattab=map
- Last taxonomy: Sphingobium
- 16S sequence: D16149
- Sequence Identity:
- Total samples: 1701
- soil counts: 571
- aquatic counts: 624
- animal counts: 250
- plant counts: 256
Sequence information
16S sequences
- @ref: 67770
- description: Sphingomonas sp. SYK6 gene for 16S rRNA, partial sequence
- accession: D16149
- length: 1446
- database: ena
- NCBI tax ID: 502559
External links
@ref: 67770
culture collection no.: JCM 17495, FERM AP-20677, NBRC 103272
Reference
@id | authors | title | doi/url |
---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |