Strain identifier
BacDive ID: 161828
Type strain: 
Species: Algoriella xinjiangensis
Strain history: L. Zhang XJ109.
NCBI tax ID(s): 684065 (species)
version 9.1 (current version)
General
@ref: 67770
BacDive-ID: 161828
keywords: genome sequence, 16S sequence, Bacteria
description: Algoriella xinjiangensis JCM 16590 is a bacterium that was isolated from Sewage water from the city Urumqi.
NCBI tax id
- NCBI tax id: 684065
- Matching level: species
strain history
- @ref: 67770
- history: L. Zhang XJ109.
doi: 10.13145/bacdive161828.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Flavobacteriia
- order: Flavobacteriales
- family: Weeksellaceae
- genus: Algoriella
- species: Algoriella xinjiangensis
- full scientific name: Algoriella xinjiangensis Yang et al. 2016
@ref: 67770
domain: Bacteria
phylum: Bacteroidetes
class: Flavobacteriia
order: Flavobacteriales
family: Weeksellaceae
genus: Algoriella
species: Algoriella xinjiangensis
full scientific name: Algoriella xinjiangensis Yang et al. 2016
type strain: yes
Morphology
cell morphology
| @ref | gram stain | confidence | motility |
|---|---|---|---|
| 69480 | negative | 96.188 | |
| 69480 | 90 | no |
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 10
Physiology and metabolism
spore formation
- @ref: 69481
- spore formation: no
- confidence: 100
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Sewage water from the city Urumqi
- geographic location: Xinjiang Uigur Autonomous Region
- country: China
- origin.country: CHN
- continent: Asia
taxonmaps
- @ref: 69479
- File name: preview.99_27190.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_468;96_3493;97_16422;98_20373;99_27190&stattab=map
- Last taxonomy: Algoriella xinjiangensis subclade
- 16S sequence: GQ383925
- Sequence Identity:
- Total samples: 8522
- soil counts: 1069
- aquatic counts: 3155
- animal counts: 4040
- plant counts: 258
Sequence information
16S sequences
- @ref: 67770
- description: Algoriella xinjiangensis strain XJ109 16S ribosomal RNA gene, partial sequence
- accession: GQ383925
- length: 1483
- database: nuccore
- NCBI tax ID: 684065
Genome sequences
- @ref: 67770
- description: Algoriella xinjiangensis XJ109
- accession: GCA_900115015
- assembly level: scaffold
- database: ncbi
- NCBI tax ID: 684065
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69481 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 100 | no |
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 96.188 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 95.17 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 85.874 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 89.497 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 97.475 | no |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | no | 90 | no |
External links
@ref: 67770
culture collection no.: JCM 16590, CGMCC 1.10229
literature
- topic: Phylogeny
- Pubmed-ID: 26310805
- title: Algoriella xinjiangensis gen. nov., sp. nov., a new psychrotolerant bacterium of the family Flavobacteriaceae.
- authors: Yang N, Zhang L, Sun C
- journal: Antonie Van Leeuwenhoek
- DOI: 10.1007/s10482-015-0564-6
- year: 2015
- mesh: Bacterial Proteins/*genetics/metabolism, Bacterial Typing Techniques, Flavobacteriaceae/*classification/physiology/ultrastructure, Lipid Metabolism, Molecular Sequence Data, RNA, Ribosomal, 16S/genetics
- topic2: Metabolism
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |