Strain identifier

BacDive ID: 16162

Type strain: No

Species: Streptoverticillium ladakanum

Strain history: KCC S-0778 <-- IFO 13476 <-- SAJ <-- ISP 5587 <-- NRRL 3191 <-- Upjohn Co., USA; UC 2654.

NCBI tax ID(s): 35621 (species)

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General

@ref: 9664

BacDive-ID: 16162

DSM-Number: 40587

keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic

description: Streptoverticillium ladakanum DSM 40587 is a spore-forming, mesophilic bacterium that builds an aerial mycelium.

NCBI tax id

  • NCBI tax id: 35621
  • Matching level: species

strain history

@refhistory
9664<- E.B. Shirling, ISP (Streptoverticillium ladakanum) <- NRRL <- Upjohn Co., UC 2654
67770KCC S-0778 <-- IFO 13476 <-- SAJ <-- ISP 5587 <-- NRRL 3191 <-- Upjohn Co., USA; UC 2654.

doi: 10.13145/bacdive16162.20250331.9.3

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptoverticillium
  • species: Streptoverticillium ladakanum
  • full scientific name: Streptoverticillium ladakanum corrig. Hanka et al. 1966 (Approved Lists 1980)

  • synonyms

    @refsynonym
    20215Streptomyces mobaraensis
    20215Streptoverticillium ladakanus
    20215Streptomyces ladakanus
    20215Streptomyces ladakanum
    20215Streptoverticillium mobaraense

@ref: 9664

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces mobaraensis

full scientific name: Streptomyces mobaraensis (Nagatsu and Suzuki 1963) Witt and Stackebrandt 1991 emend. Nouioui et al. 2018

type strain: no

Morphology

cell morphology

  • @ref: 125439
  • gram stain: positive
  • confidence: 99.8

colony morphology

@refcolony colormedium used
69221Fawn brown (8007)suter with tyrosine
69221Brown beige (1011)ISP 4
69221Ochre brown (8001)ISP 2
69221Ochre yellow (1024)ISP 6
69221Olive brown (8008), nut brown (8011)ISP 5
69221Olive brown (8008), nut brown (8011)ISP 7
69221Pastel yellow (1034), beige (1001)ISP 3
69221Sepia brown (8014)suter without tyrosine

multicellular morphology

@refforms multicellular complexcomplex namecomplex colormedium name
69221yesAerial myceliumSignal white (9003)ISP 2
69221yesAerial myceliumOyster white (1013)ISP 3
69221yesAerial myceliumOyster white (1013)ISP 4
69221yesAerial myceliumTelegrey 2 (7046), telegrey 4 (7047)ISP 5
69221noAerial myceliumISP 6
69221yesAerial myceliumAgate grey (7038), light grey (7035)ISP 7
69221noAerial myceliumsuter with tyrosine
69221yesAerial myceliumLight grey (7035)suter without tyrosine

pigmentation

@refproductionnamecolor
69221yesMelanin
69221yessoluble pigmentGreen brown (8000), brown beige (1011), clay brown (8003)

multimedia

@refmultimedia contentcaptionintellectual property rights
9664https://www.dsmz.de/microorganisms/photos/DSM_40587.jpgMedium 987 28°C© Leibniz-Institut DSMZ
69221DSM_40587_image5.jpeg(ISP6, ISP7)Helmholtz-Zentrum für Infektionsforschung GmbH
69221DSM_40587_image6.jpeg(ISP6, ISP7)Helmholtz-Zentrum für Infektionsforschung GmbH

Culture and growth conditions

culture medium

  • @ref: 9664
  • name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/65
  • composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

@refgrowthtypetemperature
9664positivegrowth28
67770positivegrowth28

Physiology and metabolism

oxygen tolerance

  • @ref: 125439
  • oxygen tolerance: obligate aerobe
  • confidence: 96

spore formation

  • @ref: 125439
  • spore formation: yes
  • confidence: 90.8

compound production

  • @ref: 9664
  • compound: 5 azacytidine

halophily

  • @ref: 69221
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837928087glycogen-fermentation
6837917992sucrose-fermentation
6837917716lactose-fermentation
6837917306maltose-fermentation
6837916899D-mannitol-fermentation
6837965327D-xylose-fermentation
6837916988D-ribose-fermentation
6837917634D-glucose-fermentation
683795291gelatin-hydrolysis
6837916199urea-hydrolysis
683794853esculin-hydrolysis
6837917632nitrate-reduction
6922122599arabinose-growth
6922162968cellulose+/-growth
6922128757fructose+/-growth
6922117234glucose+growth
6922117268inositol+/-growth
6922137684mannose-growth
6922116634raffinose+/-growth
6922126546rhamnose+/-growth
6922117992sucrose+/-growth
6922118222xylose+/-growth

metabolite production

  • @ref: 67770
  • Chebi-ID: 2038
  • metabolite: 5-azacytidine
  • production: yes

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase+3.2.1.24
68382beta-glucuronidase-3.2.1.31
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382valine arylamidase+
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase+3.1.3.1
68379urease-3.5.1.5
68379alpha-glucosidase+3.2.1.20
68379beta-galactosidase-3.2.1.23
68379alkaline phosphatase+3.1.3.1
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-glucosidase+3.2.1.20
68379gelatinase-
68379beta-glucosidase-3.2.1.21
68379beta-glucuronidase-3.2.1.31
68379pyrrolidonyl arylamidase+3.4.19.3
68379pyrazinamidase-3.5.1.B15

API coryne

@refNITPYZPYRAPALbeta GURbeta GALalpha GLUbeta NAGESCUREGELGLURIBXYLMANMALLACSACGLYG
69221--++--++/------------

API zym

@refAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
69221+++-+++/-+/-+/-++-+/--++/--+-

Safety information

risk assessment

  • @ref: 9664
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptomyces mobaraensis gene for 16S rRNA, partial sequence, strain: NBRC 13476AB1844301475nuccore35621
20218Streptoverticillium ladakanum var. ladakanum partial 16S rRNAX531671357nuccore35621
124043Streptomyces mobaraensis gene for 16S ribosomal RNA, partial sequence, strain: JCM 4778.D44355120nuccore35621

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptomyces mobaraensis DSM 40587GCA_020099395completencbi35621
66792Streptomyces mobaraensis strain DSM 4058735621.10completepatric35621
66792Streptomyces mobaraensis DSM 40587GCA_022759525completencbi35621
66792Streptomyces mobaraensis strain DSM 4058735621.13completepatric35621
66792Streptomyces mobaraensis strain DSM 4058735621.11completepatric35621
66792Streptomyces mobaraensis strain DSM 4058735621.12completepatric35621

Genome-based predictions

predictions

@refmodeltraitdescriptionpredictionconfidencetraining_data
125438gram-positivegram-positivePositive reaction to Gram-stainingyes89.145no
125438anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no96.863no
125438aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)yes87.953no
125438spore-formingspore-formingAbility to form endo- or exosporesyes89.164no
125438thermophilethermophilicAbility to grow at temperatures above or equal to 45°Cno97yes
125438motile2+flagellatedAbility to perform flagellated movementno88no
125439BacteriaNetspore_formationAbility to form endo- or exosporesyes90.8
125439BacteriaNetmotilityAbility to perform movementno89.1
125439BacteriaNetgram_stainReaction to gram-stainingpositive99.8
125439BacteriaNetoxygen_toleranceOxygenic conditions needed for growthobligate aerobe96

External links

@ref: 9664

culture collection no.: DSM 40587, ATCC 27441, CBS 777.72, IFO 13476, ISP 5587, KCC S-0778, NBRC 13476, NRRL 3191, RIA 1437, UC 2654, JCM 4778, BCRC 12422, CECT 3263, VKM Ac-879

straininfo link

  • @ref: 85227
  • straininfo: 45806

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Metabolism22720914Enzymatic characterization of transglutaminase from Streptomyces mobaraensis DSM 40587 in high salt and effect of enzymatic cross-linking of yak milk proteins on functional properties of stirred yogurt.Zhang L, Zhang L, Yi H, Du M, Ma C, Han X, Feng Z, Jiao Y, Zhang YJ Dairy Sci10.3168/jds.2011-51252012Animals, Cattle, Female, Food Microbiology/methods, Food Technology/methods, Milk Proteins/*chemistry, Salts/metabolism, Streptomyces/*enzymology/metabolism, Transglutaminases/*metabolism, Viscosity, Yogurt/analysis/*microbiology/standardsBiotechnology
Metabolism33651593Enhanced Production of Transglutaminase in Streptomyces mobaraensis through Random Mutagenesis and Site-Directed Genetic Modification.Yin X, Li Y, Zhou J, Rao S, Du G, Chen J, Liu SJ Agric Food Chem10.1021/acs.jafc.1c006452021Mutagenesis, Promoter Regions, Genetic, *Streptomyces/genetics/metabolism, *Transglutaminases/genetics/metabolismBiotechnology

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9664Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40587)https://www.dsmz.de/collection/catalogue/details/culture/DSM-40587
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68379Automatically annotated from API Coryne
68382Automatically annotated from API zym
69221Wink, J.https://cdn.dsmz.de/wink/DSM%2040587.pdfCompendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig
85227Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID45806.1StrainInfo: A central database for resolving microbial strain identifiers
124043Isabel Schober, Julia KoblitzData extracted from sequence databases, automatically matched based on designation and taxonomy
125438Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann10.1101/2024.08.12.607695Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets
125439Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardyhttps://github.com/GenomeNet/deepGdeepG: Deep Learning for Genome Sequence Data. R package version 0.3.1