Strain identifier

BacDive ID: 16162

Type strain: No

Species: Streptomyces mobaraensis

Strain history: KCC S-0778 <-- IFO 13476 <-- SAJ <-- ISP 5587 <-- NRRL 3191 <-- Upjohn Co., USA; UC 2654.

NCBI tax ID(s): 35621 (species)

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General

@ref: 9664

BacDive-ID: 16162

DSM-Number: 40587

keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic

description: Streptomyces mobaraensis DSM 40587 is a spore-forming, mesophilic bacterium that builds an aerial mycelium.

NCBI tax id

  • NCBI tax id: 35621
  • Matching level: species

strain history

@refhistory
9664<- E.B. Shirling, ISP (Streptoverticillium ladakanum) <- NRRL <- Upjohn Co., UC 2654
67770KCC S-0778 <-- IFO 13476 <-- SAJ <-- ISP 5587 <-- NRRL 3191 <-- Upjohn Co., USA; UC 2654.

doi: 10.13145/bacdive16162.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces mobaraensis
  • full scientific name: Streptomyces mobaraensis (Nagatsu and Suzuki 1963) Witt and Stackebrandt 1991

  • synonyms

    @refsynonym
    20215Streptoverticillium mobaraense
    20215Streptoverticillium ladakanum
    20215Streptomyces mobaraensis
    20215Streptoverticillium ladakanus
    20215Streptomyces ladakanus
    20215Streptomyces ladakanum

@ref: 9664

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces mobaraensis

full scientific name: Streptomyces mobaraensis (Nagatsu and Suzuki 1963) Witt and Stackebrandt 1991 emend. Nouioui et al. 2018

type strain: no

Morphology

cell morphology

@refmotilityconfidencegram stain
69480no94.192
69480100positive

colony morphology

@refcolony colormedium used
69221Fawn brown (8007)suter with tyrosine
69221Brown beige (1011)ISP 4
69221Ochre brown (8001)ISP 2
69221Ochre yellow (1024)ISP 6
69221Olive brown (8008), nut brown (8011)ISP 5
69221Olive brown (8008), nut brown (8011)ISP 7
69221Pastel yellow (1034), beige (1001)ISP 3
69221Sepia brown (8014)suter without tyrosine

multicellular morphology

@refforms multicellular complexcomplex namecomplex colormedium name
69221yesAerial myceliumSignal white (9003)ISP 2
69221yesAerial myceliumOyster white (1013)ISP 3
69221yesAerial myceliumOyster white (1013)ISP 4
69221yesAerial myceliumTelegrey 2 (7046), telegrey 4 (7047)ISP 5
69221noAerial myceliumISP 6
69221yesAerial myceliumAgate grey (7038), light grey (7035)ISP 7
69221noAerial myceliumsuter with tyrosine
69221yesAerial myceliumLight grey (7035)suter without tyrosine

pigmentation

@refproductionnamecolor
69221yesMelanin
69221yessoluble pigmentGreen brown (8000), brown beige (1011), clay brown (8003)

multimedia

@refmultimedia contentcaptionintellectual property rights
9664https://www.dsmz.de/microorganisms/photos/DSM_40587.jpgMedium 987 28°C© Leibniz-Institut DSMZ
69221DSM_40587_image5.jpeg(ISP6, ISP7)Helmholtz-Zentrum für Infektionsforschung GmbH
69221DSM_40587_image6.jpeg(ISP6, ISP7)Helmholtz-Zentrum für Infektionsforschung GmbH

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
9664GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
9664STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium252.pdf

culture temp

@refgrowthtypetemperaturerange
9664positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481yes100
69480yes100

compound production

  • @ref: 9664
  • compound: 5 azacytidine

halophily

  • @ref: 69221
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6922122599arabinose-growth
6922162968cellulose+/-growth
6922128757fructose+/-growth
6922117234glucose+growth
6922117268inositol+/-growth
6922137684mannose-growth
6922116634raffinose+/-growth
6922126546rhamnose+/-growth
6922117992sucrose+/-growth
6922118222xylose+/-growth
6837917632nitrate-reduction
683794853esculin-hydrolysis
6837916199urea-hydrolysis
683795291gelatin-hydrolysis
6837917634D-glucose-fermentation
6837916988D-ribose-fermentation
6837965327D-xylose-fermentation
6837916899D-mannitol-fermentation
6837917306maltose-fermentation
6837917716lactose-fermentation
6837917992sucrose-fermentation
6837928087glycogen-fermentation

metabolite production

  • @ref: 67770
  • Chebi-ID: 2038
  • metabolite: 5-azacytidine
  • production: yes

enzymes

@refvalueactivityec
68379gelatinase-
68379urease-3.5.1.5
68379beta-glucosidase-3.2.1.21
68379alpha-glucosidase+3.2.1.20
68379beta-galactosidase-3.2.1.23
68379beta-glucuronidase-3.2.1.31
68379alkaline phosphatase+3.1.3.1
68379pyrrolidonyl arylamidase+3.4.19.3
68379pyrazinamidase-3.5.1.B15
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase+3.2.1.24
68382alpha-fucosidase-3.2.1.51

API coryne

@refNITPYZPYRAPALbeta GURbeta GALalpha GLUbeta NAGESCUREGELGLURIBXYLMANMALLACSACGLYG
69221--++--++/------------

API zym

@refAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
69221+++-+++/-+/-+/-++-+/--++/--+-

Safety information

risk assessment

  • @ref: 9664
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptomyces mobaraensis gene for 16S rRNA, partial sequence, strain: NBRC 13476AB1844301475ena35621
20218Streptoverticillium ladakanum var. ladakanum partial 16S rRNAX531671357ena35621

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptomyces mobaraensis DSM 40587GCA_020099395completencbi35621
66792Streptomyces mobaraensis strain DSM 4058735621.10completepatric35621
66792Streptomyces mobaraensis DSM 40587GCA_022759525completencbi35621
66792Streptomyces mobaraensis strain DSM 4058735621.13completepatric35621
66792Streptomyces mobaraensis strain DSM 4058735621.11completepatric35621
66792Streptomyces mobaraensis strain DSM 4058735621.12completepatric35621

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
flagellatedno98.18no
gram-positiveyes91.102no
anaerobicno99.158no
aerobicyes92.185no
halophileno94.304yes
spore-formingyes94.785no
motileno94.26no
thermophileno98.195yes
glucose-utilyes90.636yes
glucose-fermentno91.356yes

External links

@ref: 9664

culture collection no.: DSM 40587, ATCC 27441, CBS 777.72, IFO 13476, ISP 5587, KCC S-0778, NBRC 13476, NRRL 3191, RIA 1437, UC 2654, JCM 4778, BCRC 12422, CECT 3263, VKM Ac-879

straininfo link

  • @ref: 85227
  • straininfo: 45806

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Metabolism22720914Enzymatic characterization of transglutaminase from Streptomyces mobaraensis DSM 40587 in high salt and effect of enzymatic cross-linking of yak milk proteins on functional properties of stirred yogurt.Zhang L, Zhang L, Yi H, Du M, Ma C, Han X, Feng Z, Jiao Y, Zhang YJ Dairy Sci10.3168/jds.2011-51252012Animals, Cattle, Female, Food Microbiology/methods, Food Technology/methods, Milk Proteins/*chemistry, Salts/metabolism, Streptomyces/*enzymology/metabolism, Transglutaminases/*metabolism, Viscosity, Yogurt/analysis/*microbiology/standardsBiotechnology
Metabolism33651593Enhanced Production of Transglutaminase in Streptomyces mobaraensis through Random Mutagenesis and Site-Directed Genetic Modification.Yin X, Li Y, Zhou J, Rao S, Du G, Chen J, Liu SJ Agric Food Chem10.1021/acs.jafc.1c006452021Mutagenesis, Promoter Regions, Genetic, *Streptomyces/genetics/metabolism, *Transglutaminases/genetics/metabolismBiotechnology

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9664Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40587)https://www.dsmz.de/collection/catalogue/details/culture/DSM-40587
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68379Automatically annotated from API Coryne
68382Automatically annotated from API zym
69221Wink, J.https://cdn.dsmz.de/wink/DSM%2040587.pdfCompendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
85227Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID45806.1StrainInfo: A central database for resolving microbial strain identifiers