Name: Streptomyces mobaraensis DSM 40587
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 16162

Type strain:

Species: Streptomyces mobaraensis

Culture col. no.: DSM 40587, ATCC 27441, CBS 777.72, IFO 13476, ISP 5587, KCC S-0778, NBRC 13476, NRRL 3191, RIA 1437, UC 2654, JCM 4778, BCRC 12422, CECT 3263, VKM Ac-879

Strain history: KCC S-0778 <-- IFO 13476 <-- SAJ <-- ISP 5587 <-- NRRL 3191 <-- Upjohn Co., USA; UC 2654.

NCBI tax ID(s): 35621 (species)

SI-ID 45806

ATCC 27441, IFO 13476, NRRL 3191, DSM 40587, JCM 4778, CCRC 12422, VKM Ac-879, NRRL B-3191, CBS 777.72, CECT 3263, NBRC 13476, BCRC 12422

Special Collections

Other strains from Streptomyces mobaraensis

Section

Streptomyces mobaraensis DSM 40587 is a spore-forming bacterium that builds an aerial mycelium.

spore-forming
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces mobaraensis**
	Full Scientific Name (LPSN)	Streptomyces mobaraensis (Nagatsu and Suzuki 1963) Witt and Stackebrandt 1991

	Synonym	Streptoverticillium mobaraense
	Synonym	Streptoverticillium ladakanum
	Synonym	"Streptomyces* mobaraensis"*
	Synonym	Streptoverticillium ladakanus
	Synonym	Streptomyces ladakanus
	Synonym	Streptomyces ladakanum

Information on morphological and physiological properties Morphology

[Ref.: #69221]	Colony color	Fawn brown (8007)
[Ref.: #69221]	Cultivation medium used	suter with tyrosine

[Ref.: #69221]	Colony color	Brown beige (1011)
[Ref.: #69221]	Cultivation medium used	ISP 4

[Ref.: #69221]	Colony color	Ochre brown (8001)
[Ref.: #69221]	Cultivation medium used	ISP 2

[Ref.: #69221]	Colony color	Ochre yellow (1024)
[Ref.: #69221]	Cultivation medium used	ISP 6

[Ref.: #69221]	Colony color	Olive brown (8008), nut brown (8011)
[Ref.: #69221]	Cultivation medium used	ISP 5

[Ref.: #69221]	Colony color	Olive brown (8008), nut brown (8011)
[Ref.: #69221]	Cultivation medium used	ISP 7

[Ref.: #69221]	Colony color	Pastel yellow (1034), beige (1001)
[Ref.: #69221]	Cultivation medium used	ISP 3

[Ref.: #69221]	Colony color	Sepia brown (8014)
[Ref.: #69221]	Cultivation medium used	suter without tyrosine

[Ref.: #69221]	Pigment production	yes
[Ref.: #69221]	Pigment name	Melanin
[Ref.: #69221]	Pigment production	yes
[Ref.: #69221]	Pigmentation color	Green brown (8000), brown beige (1011), clay brown (8003)
[Ref.: #69221]	Pigment name	soluble pigment

[Ref.: #69221]	Multicellular complex forming ability	yes
[Ref.: #69221]	Multicellular complex name	Aerial mycelium
[Ref.: #69221]	Multicellular complex color	Signal white (9003)
[Ref.: #69221]	Medium Name (multicellularity)	ISP 2

[Ref.: #69221]	Multicellular complex forming ability	yes
[Ref.: #69221]	Multicellular complex name	Aerial mycelium
[Ref.: #69221]	Multicellular complex color	Oyster white (1013)
[Ref.: #69221]	Medium Name (multicellularity)	ISP 3

[Ref.: #69221]	Multicellular complex forming ability	yes
[Ref.: #69221]	Multicellular complex name	Aerial mycelium
[Ref.: #69221]	Multicellular complex color	Oyster white (1013)
[Ref.: #69221]	Medium Name (multicellularity)	ISP 4

[Ref.: #69221]	Multicellular complex forming ability	yes
[Ref.: #69221]	Multicellular complex name	Aerial mycelium
[Ref.: #69221]	Multicellular complex color	Telegrey 2 (7046), telegrey 4 (7047)
[Ref.: #69221]	Medium Name (multicellularity)	ISP 5

[Ref.: #69221]	Multicellular complex forming ability	no
[Ref.: #69221]	Multicellular complex name	Aerial mycelium
[Ref.: #69221]	Medium Name (multicellularity)	ISP 6

[Ref.: #69221]	Multicellular complex forming ability	yes
[Ref.: #69221]	Multicellular complex name	Aerial mycelium
[Ref.: #69221]	Multicellular complex color	Agate grey (7038), light grey (7035)
[Ref.: #69221]	Medium Name (multicellularity)	ISP 7

[Ref.: #69221]	Multicellular complex forming ability	no
[Ref.: #69221]	Multicellular complex name	Aerial mycelium
[Ref.: #69221]	Medium Name (multicellularity)	suter with tyrosine

[Ref.: #69221]	Multicellular complex forming ability	yes
[Ref.: #69221]	Multicellular complex name	Aerial mycelium
[Ref.: #69221]	Multicellular complex color	Light grey (7035)
[Ref.: #69221]	Medium Name (multicellularity)	suter without tyrosine

Multimedia content

[Ref.: #9664]

Caption:

Medium 987 28°C

[Ref.: #9664]

Intellectual property rights:

[Ref.: #69221]

Caption:

(ISP6, ISP7)

[Ref.: #69221]

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

[Ref.: #69221]

Caption:

(ISP6, ISP7)

[Ref.: #69221]

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

Information on culture and growth conditions Culture and growth conditions

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #9664]

Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #9664]

Culture medium composition

expand / minimize

[Ref.: #9664]

Culture medium

STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #9664]			growth	28 °C
[Ref.: #67770]			growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]

Ability of spore formation

yes Confidence in %100

[Ref.: #9664]

Name of produced compound

5 azacytidine

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #69221]		NaCl		growth	0	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #69221]	arabinose ChEBI	-	growth
[Ref.: #69221]	cellulose ChEBI	+/-	growth
[Ref.: #68379]	D-glucose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-ribose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	esculin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #69221]	fructose ChEBI	+/-	growth
[Ref.: #68379]	gelatin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #69221]	glucose ChEBI	+	growth
[Ref.: #68379]	glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #69221]	inositol ChEBI	+/-	growth
[Ref.: #68379]	lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	maltose ChEBI	-	fermentation	* from API Coryne
[Ref.: #69221]	mannose ChEBI	-	growth
[Ref.: #68379]	nitrate ChEBI	-	reduction	* from API Coryne
[Ref.: #69221]	raffinose ChEBI	+/-	growth
[Ref.: #69221]	rhamnose ChEBI	+/-	growth
[Ref.: #69221]	sucrose ChEBI	+/-	growth
[Ref.: #68379]	sucrose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	urea ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #69221]	xylose ChEBI	+/-	growth
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #67770]		5-azacytidine ChEBI	yes

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68379]	alkaline phosphatase	+	3.1.3.1	* from API Coryne, API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68379]	alpha-glucosidase	+	3.2.1.20	* from API Coryne, API zym
[Ref.: #68382]	alpha-mannosidase	+	3.2.1.24	* from API zym
[Ref.: #68379]	beta-galactosidase	-	3.2.1.23	* from API Coryne
[Ref.: #68379]	beta-glucosidase	-	3.2.1.21	* from API Coryne
[Ref.: #68379]	beta-glucuronidase	-	3.2.1.31	* from API Coryne, API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68379]	gelatinase	-		* from API Coryne
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68379]	pyrazinamidase	-	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	+	3.4.19.3	* from API Coryne
[Ref.: #68379]	urease	-	3.5.1.5	* from API Coryne
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #69221]	3715	-	-	+	+	-	-	+	+/-	-	-	-	not determinedn.d.	-	-	-	-	-	-	-	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #69221]	5899	not determinedn.d.	+	+	+	-	+	+	+/-	+/-	+/-	+	+	-	+/-	-	+	+/-	-	+	-

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #9664]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptoverticillium ladakanum var. ladakanum partial 16S rRNA	X53167	1357	GenBank ENA	35621 tax ID	*
[Ref.: #20218]	Streptomyces mobaraensis gene for 16S rRNA, partial sequence, strain: NBRC 13476	AB184430	1475	GenBank ENA	35621 tax ID	*
[Ref.: #124043]	Streptomyces mobaraensis gene for 16S ribosomal RNA, partial sequence, strain: JCM 4778.	D44355	120	GenBank ENA	35621 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Streptomyces mobaraensis DSM 40587	GCA_020099395	complete	GenBank ENA	35621 tax ID	*
[Ref.: #66792]	Streptomyces mobaraensis strain DSM 40587	35621.10	complete	PATRIC	35621 tax ID	*
[Ref.: #66792]	Streptomyces mobaraensis DSM 40587	GCA_022759525	complete	GenBank ENA	35621 tax ID	*
[Ref.: #66792]	Streptomyces mobaraensis strain DSM 40587	35621.13	complete	PATRIC	35621 tax ID	*
[Ref.: #66792]	Streptomyces mobaraensis strain DSM 40587	35621.11	complete	PATRIC	35621 tax ID	*
[Ref.: #66792]	Streptomyces mobaraensis strain DSM 40587	35621.12	complete	PATRIC	35621 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces mobaraensis strain DSM 40587 PATRIC: 35621.10
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces mobaraensis DSM 40587 NCBI: GCA_020099395.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	89.145	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	96.863	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	87.953	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	89.164	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	97	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	88	no

Availability in culture collections External links

[Ref.: #9664]

Culture collection no.

DSM 40587, ATCC 27441, CBS 777.72, IFO 13476, ISP 5587, KCC S-0778, NBRC 13476, NRRL 3191, RIA 1437, UC 2654, JCM 4778, BCRC 12422, CECT 3263, VKM Ac-879

[Ref.: #85227]

SI-ID 45806

Literature:

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Enhanced Production of Transglutaminase in Streptomyces mobaraensis through Random Mutagenesis and Site-Directed Genetic Modification.	Yin X, Li Y, Zhou J, Rao S, Du G, Chen J, Liu S	J Agric Food Chem	10.1021/acs.jafc.1c00645	2021	*
Metabolism	Enzymatic characterization of transglutaminase from Streptomyces mobaraensis DSM 40587 in high salt and effect of enzymatic cross-linking of yak milk proteins on functional properties of stirred yogurt.	Zhang L, Zhang L, Yi H, Du M, Ma C, Han X, Feng Z, Jiao Y, Zhang Y	J Dairy Sci	10.3168/jds.2011-5125	2012	*

References

#9664

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40587

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69221

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#85227

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID45806.1 )

#124043

Dr. Isabel Schober, Dr. Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

* These data were automatically processed and therefore are not curated

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Streptomyces mobaraensis strain DSM 40587

Streptomyces mobaraensis DSM 40587

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