Strain identifier

BacDive ID: 161379

Type strain: Yes

Species: Halobacterium jilantaiense

Strain history: S. Liu NG4 <-- Y. Ma and P.-J. Zhou.

NCBI tax ID(s): 355548 (species)

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General

@ref: 67770

BacDive-ID: 161379

keywords: genome sequence, 16S sequence, Archaea, mesophilic

description: Halobacterium jilantaiense JCM 13558 is a mesophilic archaeon that was isolated from Jilantai salt lake in Inner Mongolia.

NCBI tax id

  • NCBI tax id: 355548
  • Matching level: species

strain history

  • @ref: 67770
  • history: S. Liu NG4 <-- Y. Ma and P.-J. Zhou.

doi: 10.13145/bacdive161379.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/archaea
  • keyword: phylum/methanobacteriota
  • domain: Archaea
  • phylum: Methanobacteriota
  • class: Halobacteria
  • order: Halobacteriales
  • family: Halobacteriaceae
  • genus: Halobacterium
  • species: Halobacterium jilantaiense
  • full scientific name: Halobacterium jilantaiense Yang et al. 2006

@ref: 67770

domain: Archaea

phylum: Euryarchaeota

class: Halobacteria

order: Halobacteriales

family: Halobacteriaceae

genus: Halobacterium

species: Halobacterium jilantaiense

full scientific name: Halobacterium jilantaiense Yang et al. 2006

type strain: yes

Culture and growth conditions

culture temp

  • @ref: 67770
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 67770
  • sample type: Jilantai salt lake in Inner Mongolia
  • country: China
  • origin.country: CHN
  • continent: Asia

taxonmaps

  • @ref: 69479
  • File name: preview.99_192701.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_17654;96_68930;97_89585;98_125600;99_192701&stattab=map
  • Last taxonomy: Halobacterium jilantaiense subclade
  • 16S sequence: AB477970
  • Sequence Identity:
  • Total samples: 15
  • soil counts: 8
  • aquatic counts: 7

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
67770Halobacterium jilantaiense gene for 16S ribosomal RNA, partial sequence, strain: JCM 13558AB4779701433ena355548
67770Halobacterium jilantaiense 16S ribosomal RNA gene, partial sequenceDQ2564091396ena355548

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Halobacterium jilantaiense CGMCC 1.53372617270915draftimg355548
67770Halobacterium jilantaiense CGMCC 1.5337GCA_900110535contigncbi355548
66792Halobacterium jilantaiense strain CGMCC 1.5337355548.5wgspatric355548

GC content

  • @ref: 67770
  • GC-content: 64.2
  • method: thermal denaturation, midpoint method (Tm)

External links

@ref: 67770

culture collection no.: JCM 13558, CGMCC 1.5337

straininfo link

  • @ref: 113382
  • straininfo: 297229

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny17012561Halobacterium jilantaiense sp. nov., a halophilic archaeon isolated from a saline lake in Inner Mongolia, China.Yang Y, Cui HL, Zhou PJ, Liu SJInt J Syst Evol Microbiol10.1099/ijs.0.64437-02006Bacterial Typing Techniques, Base Composition, China, DNA, Archaeal/analysis, DNA, Ribosomal/analysis, Fresh Water/chemistry/*microbiology, Genes, rRNA, Halobacterium/chemistry/*classification/genetics/isolation & purification, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Sodium Chloride, Species SpecificityGenetics
Phylogeny18768619Halobacterium piscisalsi sp. nov., from fermented fish (pla-ra) in Thailand.Yachai M, Tanasupawat S, Itoh T, Benjakul S, Visessanguan W, Valyasevi RInt J Syst Evol Microbiol10.1099/ijs.0.65592-02008Base Composition, Carbohydrate Metabolism, DNA, Archaeal/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fish Products/*microbiology, Genes, rRNA, Halobacterium/*classification/genetics/*isolation & purification/physiology, Hydrogen-Ion Concentration, Hypotonic Solutions/toxicity, Locomotion, Microbial Viability, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/analysis, Phylogeny, RNA, Archaeal/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Sodium Chloride/metabolism, Temperature, ThailandMetabolism
Phylogeny22058320Halobacterium piscisalsi Yachai et al. 2008 is a later heterotypic synonym of Halobacterium salinarum Elazari-Volcani 1957.Minegishi H, Echigo A, Shimane Y, Kamekura M, Tanasupawat S, Visessanguan W, Usami RInt J Syst Evol Microbiol10.1099/ijs.0.036905-02011DNA, Archaeal/genetics, DNA-Directed RNA Polymerases/genetics, *Food Microbiology, Halobacterium/*classification/genetics/isolation & purification, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, ThailandBiotechnology
Phylogeny25112838Halobacterium rubrum sp. nov., isolated from a marine solar saltern.Han D, Cui HLArch Microbiol10.1007/s00203-014-1023-x2014Base Composition, China, DNA, Archaeal/genetics, Glycolipids/analysis, Halobacterium/*classification/genetics/*isolation & purification/physiology, Hydrogen-Ion Concentration, Lipids/analysis, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Salinity, *Sodium ChlorideEnzymology
Phylogeny28901903Halobacterium litoreum sp. nov., isolated from a marine solar saltern.Lu ZZ, Li Y, Zhou Y, Cui HL, Li ZRInt J Syst Evol Microbiol10.1099/ijsem.0.0022592017Base Composition, China, DNA, Archaeal/genetics, Genes, Archaeal, Glycolipids/analysis, Halobacterium/*classification/genetics/isolation & purification, Phospholipids/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, *Salinity, Sequence Analysis, DNA, *Water MicrobiologyTranscriptome

Reference

@idauthorstitledoi/url
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
113382Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID297229.1