Halobacterium jilantaiense (CGMCC 1.5337, JCM 13558)

Name: Halobacterium jilantaiense (CGMCC 1.5337, JCM 13558)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 161379

Type strain

Culture col. no. CGMCC 1.5337 JCM 13558

NCBI tax ID(s) 355548

Special Collections JCM

History JCM <-- S. Liu NG4 <-- Y. Ma and P.-J. Zhou.

Links

Halobacterium jilantaiense JCM 13558 is an archaeon that was isolated from Jilantai salt lake in Inner Mongolia.

genome sequence 16S sequence Archaea

Name and taxonomic classification

SI-ID 297229

CGMCC 1.5337,JCM 13558

@ref 20215

Last LPSN update 2026-05-29 08:44:40

Domain Archaea

Phylum Methanobacteriota

Class Halobacteria

Order Halobacteriales

Family Halobacteriaceae

Genus Halobacterium

Species Halobacterium jilantaiense

Full scientific name Halobacterium jilantaiense Yang et al. 2006

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	positive	94.51

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
67770	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	facultative anaerobe	94.328

Spore formation

@ref	Spore formation	Confidence
125439		92.251

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
67770	Jilantai salt lake in Inner Mongolia	China	CHN	Asia

Taxonmaps

69479

Global distribution of 16S sequence AB477970 (>99% sequence identity) for Halobacterium jilantaiense subclade from Microbeatlas

Aquatic Samples	7
Soil Samples	8
Animal Samples	0
Plant Samples	0
Total Samples	15

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	IMG-taxon 2617270915 annotated assembly for Halobacterium jilantaiense CGMCC 1.5337	contig	GCA_900110535	355548.5	2617270915	355548	74.24

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
67770	Halobacterium jilantaiense gene for 16S ribosomal RNA, partial sequence, strain: JCM 13558	AB477970	1433	355548
67770	Halobacterium jilantaiense 16S ribosomal RNA gene, partial sequence	DQ256409	1396	355548
124043	Halobacterium jilantaiense gene for 16S rRNA, complete sequence, strain: JCM 13558.	AB663359	1473	355548

GC content

@ref	GC-content (mol%)	Method
67770	64.2	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: IMG-taxon 2617270915 annotated assembly for Halobacterium jilantaiense CGMCC 1.5337
BV-BRC: 355548.5

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	gram_stain	BacteriaNetⓘ	positive	94.51	no
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	94.33	no
125439	motility	BacteriaNetⓘ	no	87.34	no
125439	spore_formation	BacteriaNetⓘ	no	92.25	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Bacterial Metabolism and Transport Genes Are Associated with the Preference of Drosophila melanogaster for Dietary Yeast.	Call TB, Davis EK, Bean JD, Lemmon SG, Chaston JM.	Appl Environ Microbiol	10.1128/aem.00720-22	2022
Genetics	Genetic Influences of the Microbiota on the Life Span of Drosophila melanogaster.	Matthews MK, Wilcox H, Hughes R, Veloz M, Hammer A, Banks B, Walters A, Schneider KJ, Sexton CE, Chaston JM.	Appl Environ Microbiol	10.1128/aem.00305-20	2020
Phylogeny	Halobacterium piscisalsi Yachai et al. 2008 is a later heterotypic synonym of Halobacterium salinarum Elazari-Volcani 1957.	Minegishi H, Echigo A, Shimane Y, Kamekura M, Tanasupawat S, Visessanguan W, Usami R	Int J Syst Evol Microbiol	10.1099/ijs.0.036905-0	2011
Phylogeny	Halobacterium litoreum sp. nov., isolated from a marine solar saltern.	Lu ZZ, Li Y, Zhou Y, Cui HL, Li ZR	Int J Syst Evol Microbiol	10.1099/ijsem.0.002259	2017
Phylogeny	Halobacterium rubrum sp. nov., isolated from a marine solar saltern.	Han D, Cui HL	Arch Microbiol	10.1007/s00203-014-1023-x	2014
Phylogeny	Halobacterium piscisalsi sp. nov., from fermented fish (pla-ra) in Thailand.	Yachai M, Tanasupawat S, Itoh T, Benjakul S, Visessanguan W, Valyasevi R	Int J Syst Evol Microbiol	10.1099/ijs.0.65592-0	2008
Phylogeny	Halobacterium jilantaiense sp. nov., a halophilic archaeon isolated from a saline lake in Inner Mongolia, China.	Yang Y, Cui HL, Zhou PJ, Liu SJ	Int J Syst Evol Microbiol	10.1099/ijs.0.64437-0	2006

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Halobacterium jilantaiense (CGMCC 1.5337, JCM 13558)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_900110535

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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