Strain identifier
BacDive ID: 16137
Type strain: 
Species: Streptomyces abikoensis
Strain Designation: 138
Strain history: KCC S-0162 <-- IFO 3398 <-- M. Shibata 138.
NCBI tax ID(s): 68195 (species)
General
@ref: 9407
BacDive-ID: 16137
DSM-Number: 40253
keywords: 16S sequence, Bacteria, mesophilic, antibiotic compound production
description: Streptomyces abikoensis 138 is a mesophilic bacterium that produces antibiotic compounds and was isolated from soil.
NCBI tax id
- NCBI tax id: 68195
- Matching level: species
strain history
| @ref | history |
|---|---|
| 9407 | <- E.B. Shirling, ISP <- K. Nakazawa, 138 |
| 67770 | KCC S-0162 <-- IFO 3398 <-- M. Shibata 138. |
doi: 10.13145/bacdive16137.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces abikoensis
- full scientific name: Streptomyces abikoensis (Umezawa et al. 1951) Witt and Stackebrandt 1991
synonyms
@ref synonym 20215 Streptoverticillium luteoverticillatum 20215 Streptomyces olivoreticuli 20215 Streptoverticillium olivoreticulum subsp. cellulophilum 20215 Streptomyces abikoensum 20215 Streptomyces abikoensis 20215 Streptomyces luteoverticillatus 20215 Streptomyces parvisporogenes 20215 Streptoverticillium abikoense 20215 Streptoverticillium olivoreticuli 20215 Streptoverticillium parvisporogenum 20215 Streptoverticillium olivoreticuli subsp. cellulophilum 20215 Streptoverticillium ehimense 20215 Streptoverticillium parvisporogenes 20215 Streptoverticillium olivoreticulum 20215 Streptomyces ehimensis 20215 Streptomyces ekimensis
@ref: 9407
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces abikoensis
full scientific name: Streptomyces abikoensis (Umezawa et al. 1951) Witt and Stackebrandt 1991
strain designation: 138
type strain: no
Culture and growth conditions
culture medium
- @ref: 9407
- name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
- growth: yes
- link: https://mediadive.dsmz.de/medium/65
- composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 9407 | positive | growth | 28 | mesophilic |
| 67770 | positive | growth | 28 | mesophilic |
Physiology and metabolism
compound production
- @ref: 9407
- compound: candimycin
metabolite production
- @ref: 67770
- metabolite: candimycin
- production: yes
Isolation, sampling and environmental information
isolation
| @ref | sample type | country | origin.country | continent | geographic location |
|---|---|---|---|---|---|
| 9407 | soil | Japan | JPN | Asia | |
| 67770 | Soil | Japan | JPN | Asia | Matsuyama, Ehime Pref. |
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
Safety information
risk assessment
- @ref: 9407
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Streptomyces ehimensis strain NBRC 12858 16S ribosomal RNA gene, partial sequence | JN566035 | 1371 | ena | 68195 |
| 67770 | Streptomyces ehimensis strain KCTC 9727 16S ribosomal RNA gene, partial sequence | AY999834 | 1418 | ena | 68195 |
External links
@ref: 9407
culture collection no.: DSM 40253, ATCC 23903, CBS 799.68, IFO 12858, IFO 3398, ISP 5253, NBRC 12858, NBRC 3398, RIA 1179, JCM 4162, BCRC 13319, CGMCC 4.1668, HAMBI 1042, JCM 4635, KCTC 9727, KCTC 9728, NRRL B-1967, VKM Ac-945
straininfo link
- @ref: 85202
- straininfo: 38284
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 9407 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40253) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-40253 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 85202 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID38284.1 | StrainInfo: A central database for resolving microbial strain identifiers |