Name: Streptomyces abikoensis 138
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 16137

Type strain:

Species: Streptomyces abikoensis

Strain Designation: 138

Culture col. no.: DSM 40253, ATCC 23903, CBS 799.68, IFO 12858, IFO 3398, ISP 5253, NBRC 12858, NBRC 3398, RIA 1179, JCM 4162, BCRC 13319, CGMCC 4.1668, HAMBI 1042, JCM 4635, KCTC 9727, KCTC 9728, NRRL B-1967, VKM Ac-945

Strain history: KCC S-0162 <-- IFO 3398 <-- M. Shibata 138.

NCBI tax ID(s): 68195 (species)

SI-ID 38284

ATCC 23903, IFO 3398, IFO 12858, DSM 40253, JCM 4162, CCRC 13319, NRRL B-1967, VKM Ac-945, JCM 4635, CBS 799.68, KCTC 9727, KCTC 9728, AS 4.1668, NBRC 12858, NBRC 3398, BCRC 13319, HAMBI 1042, CGMCC 4.1668

Special Collections

Other strains from Streptomyces abikoensis

Section

Streptomyces abikoensis 138 is a bacterium that produces antibiotic compounds and was isolated from soil.

antibiotic compound production
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces abikoensis**
	Full Scientific Name (LPSN)	Streptomyces abikoensis (Umezawa et al. 1951) Witt and Stackebrandt 1991

	Synonym	Streptoverticillium luteoverticillatum
	Synonym	"Streptomyces* olivoreticuli"*
	Synonym	Streptoverticillium olivoreticulum subsp. cellulophilum
	Synonym	"Streptomyces* abikoensum"*
	Synonym	"Streptomyces* abikoensis"*
	Synonym	Streptomyces luteoverticillatus
	Synonym	Streptomyces parvisporogenes
	Synonym	Streptoverticillium abikoense
	Synonym	Streptoverticillium olivoreticuli
	Synonym	Streptoverticillium parvisporogenum
	Synonym	Streptoverticillium olivoreticuli subsp. cellulophilum
	Synonym	Streptoverticillium ehimense
	Synonym	Streptoverticillium parvisporogenes
	Synonym	Streptoverticillium olivoreticulum
	Synonym	Streptomyces ehimensis
	Synonym	Streptomyces ekimensis

Information on culture and growth conditions Culture and growth conditions

[Ref.: #9407]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #9407]

Culture medium growth

[Ref.: #9407]

Culture medium link

Medium recipe at MediaDive

[Ref.: #9407]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #9407]			growth	28 °C
[Ref.: #67770]			growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #9407]

Name of produced compound

candimycin

	Metabolite production	Metabolite	Production
[Ref.: #67770]		candimycin	yes

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9407]	Sample type/isolated from	soil
[Ref.: #9407]	Country	Japan
[Ref.: #9407]	Country ISO 3 Code	JPN
[Ref.: #9407]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Soil
[Ref.: #67770]	Geographic location (country and/or sea, region)	Matsuyama, Ehime Pref.
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #9407]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptomyces ehimensis strain KCTC 9727 16S ribosomal RNA gene, partial sequence	AY999834	1418	GenBank ENA	68195 tax ID
[Ref.: #124043]	Streptomyces ehimensis gene for 16S ribosomal RNA, partial sequence, strain: JCM 4162.	D44021	120	GenBank ENA	68195 tax ID	*
[Ref.: #20218]	Streptomyces ehimensis strain NBRC 12858 16S ribosomal RNA gene, partial sequence	JN566035	1371	GenBank ENA	68195 tax ID	*

Availability in culture collections External links

[Ref.: #9407]

Culture collection no.

DSM 40253, ATCC 23903, CBS 799.68, IFO 12858, IFO 3398, ISP 5253, NBRC 12858, NBRC 3398, RIA 1179, JCM 4162, BCRC 13319, CGMCC 4.1668, HAMBI 1042, JCM 4635, KCTC 9727, KCTC 9728, NRRL B-1967, VKM Ac-945

[Ref.: #85202]

SI-ID 38284

References

#9407

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40253

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#85202

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID38284.1 )

#124043

Dr. Isabel Schober, Dr. Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

* These data were automatically processed and therefore are not curated

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