Strain identifier

BacDive ID: 161358

Type strain: No

Species: Sulfurivirga caldicuralii

Strain history: K. Takai VW1.

NCBI tax ID(s): 364032 (species)

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General

@ref: 67770

BacDive-ID: 161358

keywords: 16S sequence, Bacteria

description: Sulfurivirga caldicuralii JCM 13440 is a bacterium that was isolated from Hydrothermal fluid sample from a shallow hydrothermal system occurring in coral reefs off Taketomi Island.

NCBI tax id

  • NCBI tax id: 364032
  • Matching level: species

strain history

  • @ref: 67770
  • history: K. Takai VW1.

doi: 10.13145/bacdive161358.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Beggiatoales
  • family: Piscirickettsiaceae
  • genus: Sulfurivirga
  • species: Sulfurivirga caldicuralii
  • full scientific name: Sulfurivirga caldicuralii Takai et al. 2006

@ref: 67770

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Thiotrichales

family: Piscirickettsiaceae

genus: Sulfurivirga

species: Sulfurivirga caldicuralii

full scientific name: Sulfurivirga caldicuralii Takai et al. 2006

type strain: no

Culture and growth conditions

culture temp

  • @ref: 67770
  • growth: positive
  • type: growth
  • temperature: 55

Isolation, sampling and environmental information

isolation

  • @ref: 67770
  • sample type: Hydrothermal fluid sample from a shallow hydrothermal system occurring in coral reefs off Taketomi Island
  • geographic location: Okinawa
  • country: Japan
  • origin.country: JPN
  • continent: Asia

taxonmaps

  • @ref: 69479
  • File name: preview.99_2263.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_16361;96_1223;97_1449;98_1767;99_2263&stattab=map
  • Last taxonomy: Sulfurivirga caldicuralii subclade
  • 16S sequence: AB245480
  • Sequence Identity:
  • Total samples: 346
  • soil counts: 35
  • aquatic counts: 143
  • animal counts: 154
  • plant counts: 14

Sequence information

16S sequences

  • @ref: 67770
  • description: Sulfurivirga caldicuralii gene for 16S rRNA, partial sequence, strain: VW1
  • accession: AB245480
  • length: 1456
  • database: nuccore
  • NCBI tax ID: 364032

GC content

  • @ref: 67770
  • GC-content: 51.3
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 67770

culture collection no.: JCM 13440

straininfo link

  • @ref: 113373
  • straininfo: 301428

Reference

@idauthorstitledoi/url
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
113373Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID301428.1