Strain identifier

BacDive ID: 16135

Type strain: No

Species: Streptomyces abikoensis

Strain Designation: 486

Strain history: KCC S-0099 <-- R. Shinobu 486.

NCBI tax ID(s): 66425 (species)

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General

@ref: 9117

BacDive-ID: 16135

DSM-Number: 40038

keywords: 16S sequence, Bacteria, mesophilic

description: Streptomyces abikoensis 486 is a mesophilic bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 66425
  • Matching level: species

strain history

@refhistory
9117<- E.B. Shirling, ISP <- R. Shinobu, OEU, 486
67770KCC S-0099 <-- R. Shinobu 486.

doi: 10.13145/bacdive16135.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces abikoensis
  • full scientific name: Streptomyces abikoensis (Umezawa et al. 1951) Witt and Stackebrandt 1991

  • synonyms

    @refsynonym
    20215Streptoverticillium luteoverticillatum
    20215Streptomyces olivoreticuli
    20215Streptoverticillium olivoreticulum subsp. cellulophilum
    20215Streptomyces abikoensum
    20215Streptomyces abikoensis
    20215Streptomyces luteoverticillatus
    20215Streptomyces parvisporogenes
    20215Streptoverticillium abikoense
    20215Streptoverticillium olivoreticuli
    20215Streptoverticillium parvisporogenum
    20215Streptoverticillium olivoreticuli subsp. cellulophilum
    20215Streptoverticillium ehimense
    20215Streptoverticillium parvisporogenes
    20215Streptoverticillium olivoreticulum
    20215Streptomyces ehimensis
    20215Streptomyces ekimensis

@ref: 9117

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces abikoensis

full scientific name: Streptomyces abikoensis (Umezawa et al. 1951) Witt and Stackebrandt 1991

strain designation: 486

type strain: no

Culture and growth conditions

culture medium

  • @ref: 9117
  • name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/65
  • composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
9117positivegrowth28mesophilic
67770positivegrowth28mesophilic

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentgeographic location
9117soilJapanJPNAsia
67770SoilJapanJPNAsiaSaga City

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Safety information

risk assessment

  • @ref: 9117
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptomyces luteoverticillatus gene for 16S rRNA, partial sequence, strain: NBRC 3840AB1848031448ena66425
20218Streptomyces abikoensis gene for 16S rRNA, partial sequence, strain: NBRC 12887AB2499671477ena97398
20218Streptomyces luteoverticillatus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4099D44006120ena66425
20218Streptomyces luteoverticillatus strain NBRC 12887 16S ribosomal RNA gene, partial sequenceJN5660361372ena66425

External links

@ref: 9117

culture collection no.: DSM 40038, ATCC 23933, CBS 917.68, CCRC 13323, IFO 12887, IFO 3840, ISP 5038, JCM 4099, JCM 4649, KCC S-0649, NBRC 12887, NBRC 3840, NCIMB 9720, NRRL B-1995, RIA 1109, VKM Ac-889, BCRC 13323, CGMCC 4.1974

straininfo link

  • @ref: 85200
  • straininfo: 319108

literature

  • topic: Phylogeny
  • Pubmed-ID: 34480669
  • title: Streptomyces endocoffeicus sp. nov., an endophytic actinomycete isolated from Coffea arabica (L.).
  • authors: Nammali A, Intaraudom C, Pittayakhajonwut P, Suriyachadkun C, Tadtong S, Tanasupawat S, Thawai C
  • journal: Antonie Van Leeuwenhoek
  • DOI: 10.1007/s10482-021-01648-x
  • year: 2021
  • mesh: *Actinobacteria, Bacterial Typing Techniques, Base Composition, *Coffea, DNA, Bacterial/genetics, Phospholipids, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Streptomyces/genetics, Thailand
  • topic2: Transcriptome

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9117Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40038)https://www.dsmz.de/collection/catalogue/details/culture/DSM-40038
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
85200Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID319108.1StrainInfo: A central database for resolving microbial strain identifiers