Strain identifier

BacDive ID: 16132

Type strain: Yes

Species: Streptomyces yerevanensis

Strain history: KCC A-0047 <-- T. Furumai <-- H. A. Lechevalier <-- LIA 0441.

NCBI tax ID(s): 66378 (species)

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General

@ref: 10835

BacDive-ID: 16132

DSM-Number: 43167

keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic

description: Streptomyces yerevanensis DSM 43167 is a spore-forming, mesophilic bacterium that builds an aerial mycelium and was isolated from soil.

NCBI tax id

  • NCBI tax id: 66378
  • Matching level: species

strain history

@refhistory
10835<- KCC (Microellobosporia violacea) <- V.A. Tsyganov, LIA, 0441
67770KCC A-0047 <-- T. Furumai <-- H. A. Lechevalier <-- LIA 0441.

doi: 10.13145/bacdive16132.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces yerevanensis
  • full scientific name: Streptomyces yerevanensis Goodfellow et al. 1986

  • synonyms

    @refsynonym
    20215Microellobosporia violacea
    20215Macrospora violaceus

@ref: 10835

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces yerevanensis

full scientific name: Streptomyces yerevanensis Goodfellow et al. 1986

type strain: yes

Morphology

colony morphology

@refcolony colorincubation periodmedium used
19552Violet10-14 daysISP 2
19552Violet10-14 daysISP 3
19552Violet10-14 daysISP 4
19552Violet10-14 daysISP 5
19552Violet10-14 daysISP 6
19552Violet10-14 daysISP 7

multicellular morphology

@refforms multicellular complexcomplex namemedium name
19552yesAerial MyceliumISP 2
19552yesAerial MyceliumISP 3
19552yesAerial MyceliumISP 4
19552yesAerial MyceliumISP 5
19552noISP 6
19552yesAerial MyceliumISP 7

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
10835GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
19552ISP 2yesName: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes
19552ISP 3yesName: ISP 3; 5315 Composition Dog oat flakes 20.0 g/l Trace element solution (5314) 2.5 ml/l Agar 18.0 g/l Preparation: Oat flakes are cooked for 20 minutes, trace element solution and agar are added (in the case of non rolled oat flakes the suspension has to bee filtrated). Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.8 Usage: Maintenance and taxonomy (e.g. SEM As liquid medium for metabolite production) Organisms: All Actinomycetes Trace element solution 5314 Name: Trace element solution 5314; 5314 Composition CaCl2 x H2O 3.0 g/l Fe-III-citrate 1.0 g/l MnSO4 0.2 g/l ZnCl2 0.1 g/l CuSO4 x 5 H2O 0.025 g/l Sodium tetra borate 0.2 g/l CoCl2 x 6 H2O 0.004 g/l Sodium molybdate 0.01 g/l Preparation: Use double destillated water. Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Trace element solution for different media Organisms:
19552ISP 4yesName: ISP 4; DSM 547 Solution I: Difco soluble starch, 10.0 g. Make a paste of the starch with a small amount of cold distilled water and bring to a volume of 500 ml. Solution II: CaCO3 2.0 g K2HPO4 (anhydrous) 1.0 g MgSO4 x 7 H2O 1.0 g NaCl 1.0 g (NH4)2SO4 2.0 g Distilled water 500.0 ml Trace salt solution (see below) 1.0 ml The pH should be between 7.0 and 7.4. Do not adjust if it is within this range. Mix solutions I and II together. Add 20.0 g agar. Liquify agar by steaming at 100°C for 10 to 20 min. Trace element solution: FeSO4 x 7 H2O 0.1 g MnCl2 x 4 H2O 0.1 g ZnSO4 x 7 H2O 0.1 g Distilled water 100.0 ml
19552ISP 5yesName: ISP 5 (5323) Composition L-Asparagine 1.0 g/l Glycerol 10.0 g/l K2HPO4 1.0 g/l Salt solution (see preparation) 1.0 ml/l Agar 20.0 g/l Preparation: Salt solution 1.0 g FeSO4 x 7 H2O 1.0 g MnCl2 x 4 H2O 1.0 g ZNSO4 x 7 H2O in 100 ml water Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.2 Usage: Maintenance and taxonomy Organisms: All Actinomycetes
19552ISP 6yesName: ISP 6 (5318) Composition Peptone 15.0 g/l Proteose peptose 5.0 g/l Ferric ammonium citrate 0.5 g/l Sodium glycerophosphate 1.0 g/l Sodium thiosulfate 0.08 g/l Yeast extract 1.0 g/l Agar 15.0 g/l Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Production of melanoid pigments Organisms: All Actinomycetes
19552ISP 7yesName: ISP 7 (5322) Composition Glycerol 15.0 g/l L-Tyrosine 0.5 g/l L-Asparagine 1.0 g/l K2HPO4 0.5 g/l NaCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Trace element solution 5343 1.0 ml/l Agar 20.0 Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.3 Usage: Production of melanoid pigments Organisms: All Actinomycetes
10835ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://mediadive.dsmz.de/medium/84Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
10835positivegrowth28mesophilic
19552positiveoptimum28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

spore formation

  • @ref: 19552
  • spore description: Formation of spore chains: very short, spore surface: smooth
  • type of spore: spore
  • spore formation: yes

compound production

@refcompound
10835pigmented antibiotic
10835violacin
20216Violacin

halophily

  • @ref: 19552
  • salt: NaCl
  • growth: positive
  • tested relation: maximum
  • concentration: 2.5 %

observation

  • @ref: 67770
  • observation: quinones: MK-9(H6), MK-9(H8), MK-9(H4)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
1955217234glucose+
1955222599arabinose+
1955217992sucrose+
1955218222xylose+
1955217268myo-inositol-
1955229864mannitol-
1955228757fructose-
1955226546rhamnose-
1955216634raffinose-
1955262968cellulose-
683685291gelatin-hydrolysis
6836827897tryptophan-energy source
6836816199urea-hydrolysis
6836816947citrate-assimilation
6836818257ornithine-degradation
6836825094lysine-degradation
6836829016arginine-hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6836815688acetoinno
6836835581indoleno
6836816136hydrogen sulfideno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin-
6836835581indole-

enzymes

@refvalueactivityec
68368gelatinase-
68368tryptophan deaminase-4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase-4.1.1.17
68368lysine decarboxylase-4.1.1.18
68368arginine dihydrolase-3.5.3.6
68368beta-galactosidase-3.2.1.23

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGEL
19552-----------

Isolation, sampling and environmental information

isolation

@refsample type
10835soil
67770Soil

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
108351Risk group (German classification)
195521Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptomyces yerevanensis gene for 16S ribosomal RNA, partial sequence, strain: JCM 3065D43976120ena66378
20218Streptomyces yerevanensis gene for 16S rRNA, partial sequenceAB122714566ena66378
20218Streptomyces yerevanensis gene for 16S rRNA, partial sequence, strain: NBRC 12517AB1840991453ena66378
20218Streptomyces yerevanensis strain NRRL B-16943 16S ribosomal RNA gene, partial sequenceEF1786841514ena66378

Genome sequences

  • @ref: 67770
  • description: Streptomyces yerevanensis NRRL B-16943
  • accession: GCA_000716805
  • assembly level: contig
  • database: ncbi
  • NCBI tax ID: 66378

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno94.679no
flagellatedno97.691no
gram-positiveyes89.591no
anaerobicno99.241no
halophileno93.818no
spore-formingyes93.926no
thermophileno98.404yes
glucose-utilyes89.146yes
aerobicyes94.904no
glucose-fermentno90.27no

External links

@ref: 10835

culture collection no.: DSM 43167, ATCC 43727, CUB 297, IFO 12517, KCC A-0047, KCC A-0065, NBRC 12517, NCIB 9589, LIA 0441 (= LIA 2732/3), JCM 3047, BCRC 11564, CGMCC 4.1464, IFM 1151, IFM 1242, IMET 43616, JCM 3065, LMG 19363, NCIMB 9589, NRRL B-16943, RIA 795, VKM Ac-1234

straininfo link

  • @ref: 85197
  • straininfo: 13363

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
10835Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 43167)https://www.dsmz.de/collection/catalogue/details/culture/DSM-43167
19552Wink, J.http://www.dsmz.de/microorganisms/wink_pdf/DSM43167.pdfCompendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20216Curators of the HKIhttp://www.leibniz-hki.de/de/Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI)
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68368Automatically annotated from API 20E
85197Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID13363.1StrainInfo: A central database for resolving microbial strain identifiers