Strain identifier
BacDive ID: 160958
Type strain: 
Species: Sphingomonas sp.
Strain history: Y. Doi KT-1.
NCBI tax ID(s): 28214 (species)
version 8.1 (current version)
General
@ref: 67770
BacDive-ID: 160958
keywords: 16S sequence, Bacteria, mesophilic
description: Sphingomonas sp. JCM 10459 is a mesophilic bacterium that was isolated from Water of the Arakawa River.
NCBI tax id
- NCBI tax id: 28214
- Matching level: species
strain history
- @ref: 67770
- history: Y. Doi KT-1.
doi: 10.13145/bacdive160958.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Sphingomonadales
- family: Sphingomonadaceae
- genus: Sphingomonas
- species: Sphingomonas sp.
- full scientific name: Sphingomonas Yabuuchi et al. 1990
@ref: 67770
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Sphingomonadales
family: Sphingomonadaceae
genus: Sphingomonas
species: Sphingomonas sp.
full scientific name: Sphingomonas sp.
type strain: no
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
observation
- @ref: 67770
- observation: quinones: Q-10
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Water of the Arakawa River
- geographic location: Saitama Pref.
- country: Japan
- origin.country: JPN
- continent: Asia
Sequence information
16S sequences
- @ref: 67770
- description: Sphingomonas sp. KT-1 gene for 16S ribosomal RNA, partial sequence
- accession: AB022601
- length: 1459
- database: ena
- NCBI tax ID: 88363
GC content
- @ref: 67770
- GC-content: 63
External links
@ref: 67770
culture collection no.: JCM 10459
straininfo link
- @ref: 113122
- straininfo: 111477
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Metabolism | 10473451 | Poly(aspartic acid) degradation by a Sphingomonas sp. isolated from freshwater. | Tabata K, Kasuya KI, Abe H, Masuda K, Doi Y | Appl Environ Microbiol | 10.1128/AEM.65.9.4268-4270.1999 | 1999 | Alphaproteobacteria/growth & development/*metabolism, Biodegradation, Environmental, Carbon/metabolism, Fresh Water/*microbiology, Gram-Negative Bacteria/growth & development/*metabolism, Peptides/*metabolism, Phylogeny, RNA, Ribosomal, 16S/genetics, Water Microbiology | Phylogeny |
| Metabolism | 11710094 | Microbial degradation of poly(aspartic acid) by two isolated strains of Pedobacter sp. and Sphingomonas sp. | Tabata K, Abe H, Doi Y | Biomacromolecules | 10.1021/bm9900038 | 2000 | Bacteria/*metabolism, Biodegradation, Environmental, Fresh Water, Magnetic Resonance Spectroscopy, Molecular Weight, Peptides/*metabolism, Sphingomonas/*metabolism, Water Microbiology | Phylogeny |
| Enzymology | 11777387 | Purification and characterization of poly(aspartic acid) hydrolase from Sphingomonas sp. KT-1. | Tabata K, Kajiyama M, Hiraishi T, Abe H, Yamato I, Doi Y | Biomacromolecules | 10.1021/bm0155468 | 2001 | Hydrogen-Ion Concentration, Isoelectric Point, Molecular Weight, Peptide Fragments/analysis, Peptides/*metabolism, Serine Endopeptidases/chemistry/*isolation & purification/metabolism, Sphingomonas/*enzymology, Substrate Specificity | Metabolism |
| Enzymology | 12959596 | Biochemical and molecular characterization of poly(aspartic acid) hydrolase-2 from sphingomonas sp. KT-1. | Hiraishi T, Kajiyama M, Tabata K, Abe H, Yamato I, Doi Y | Biomacromolecules | 10.1021/bm034085i | 2003 | Amino Acid Sequence, Biodegradation, Environmental, Cloning, Molecular, Edetic Acid/pharmacology, Enzyme Inhibitors, Genes, Bacterial, Hydrolysis, Molecular Sequence Data, Peptides/*metabolism, Sequence Alignment, Serine Endopeptidases/genetics/isolation & purification/*metabolism, Sphingomonas/*enzymology | Genetics |
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 113122 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID111477.1 |