Strain identifier
BacDive ID: 160727
Type strain: 
Species: Chlamydia gallinacea
Strain Designation: 08-1274/3
Strain history: <- K. Laroucau, Anses, Maisons-Alfort, France; 08-1274/3 <- F. Vorimore and K. Laroucau, Anses, Maisons-Alfort, France;
NCBI tax ID(s): 1457153 (species)
version 8.1 (current version)
General
@ref: 67640
BacDive-ID: 160727
DSM-Number: 27451
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, animal pathogen
description: Chlamydia gallinacea 08-1274/3 is a mesophilic animal pathogen that was isolated from cloacal swab from a chicken without clinical signs.
NCBI tax id
- NCBI tax id: 1457153
- Matching level: species
strain history
- @ref: 67640
- history: <- K. Laroucau, Anses, Maisons-Alfort, France; 08-1274/3 <- F. Vorimore and K. Laroucau, Anses, Maisons-Alfort, France;
doi: 10.13145/bacdive160727.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/chlamydiota
- domain: Bacteria
- phylum: Chlamydiota
- class: Chlamydiia
- order: Chlamydiales
- family: Chlamydiaceae
- genus: Chlamydia
- species: Chlamydia gallinacea
- full scientific name: Chlamydia gallinacea Sachse et al. 2015
@ref: 67640
domain: Bacteria
phylum: Chlamydiae
class: Chlamydiia
order: Chlamydiales
family: Chlamydiaceae
genus: Chlamydia
species: Chlamydia gallinacea
full scientific name: Chlamydia gallinacea Sachse et al. 2015
strain designation: 08-1274/3
type strain: yes
Culture and growth conditions
culture medium
- @ref: 67640
- name: CULTIVATION MEDIUM FOR CHLAMYDIAE (DSMZ Medium 1193)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1193
- composition: Name: CULTIVATION MEDIUM FOR CHLAMYDIAE (DSMZ Medium 1193) Composition: Aminoacids Fetal bovine serum IMDM-Medium
culture temp
- @ref: 67640
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 67640
- sample type: cloacal swab from a chicken (Gallus gallus; Barbezieux) without clinical signs
- country: France
- origin.country: FRA
- continent: Europe
taxonmaps
- @ref: 69479
- File name: preview.99_2840.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_62;96_169;97_182;98_2200;99_2840&stattab=map
- Last taxonomy: Chlamydia gallinacea
- 16S sequence: GQ398026
- Sequence Identity:
- Total samples: 294
- soil counts: 8
- aquatic counts: 15
- animal counts: 270
- plant counts: 1
Safety information
risk assessment
- @ref: 67640
- pathogenicity animal: yes
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 67640
- description: Chlamydia gallinacea 08-1274/3 16S ribosomal RNA gene, partial sequence
- accession: GQ398026
- length: 1436
- database: ena
- NCBI tax ID: 1143323
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Chlamydia gallinacea 08-1274/3 | GCA_000471025 | complete | ncbi | 1143323 |
| 66792 | Chlamydia gallinacea 08-1274/3 | 1143323.4 | plasmid | patric | 1143323 |
| 66792 | Chlamydia gallinacea 08-1274/3 | 1143323.3 | wgs | patric | 1143323 |
GC content
- @ref: 67640
- GC-content: 37.9
- method: sequence analysis
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | no | 66.603 | no |
| motile | no | 66.603 | no |
| flagellated | no | 96.075 | no |
| flagellated | no | 96.075 | no |
| gram-positive | no | 96.768 | no |
| gram-positive | no | 96.768 | no |
| anaerobic | no | 65.945 | no |
| anaerobic | no | 65.945 | no |
| aerobic | no | 91.311 | no |
| aerobic | no | 91.311 | no |
| halophile | yes | 52.984 | no |
| halophile | yes | 52.984 | no |
| spore-forming | no | 97.575 | no |
| spore-forming | no | 97.575 | no |
| glucose-util | yes | 75.805 | no |
| glucose-util | yes | 75.805 | no |
| thermophile | no | 81.28 | no |
| thermophile | no | 81.28 | no |
| glucose-ferment | yes | 50.692 | no |
| glucose-ferment | yes | 50.692 | no |
External links
@ref: 67640
culture collection no.: DSM 27451, CSUR P3509
straininfo link
- @ref: 112953
- straininfo: 403081
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 24461712 | Evidence for the existence of two new members of the family Chlamydiaceae and proposal of Chlamydia avium sp. nov. and Chlamydia gallinacea sp. nov. | Sachse K, Laroucau K, Riege K, Wehner S, Dilcher M, Creasy HH, Weidmann M, Myers G, Vorimore F, Vicari N, Magnino S, Liebler-Tenorio E, Ruettger A, Bavoil PM, Hufert FT, Rossello-Mora R, Marz M | Syst Appl Microbiol | 10.1016/j.syapm.2013.12.004 | 2014 | Animals, Bacterial Outer Membrane Proteins/genetics, Birds/*microbiology, Cells, Cultured, Chlamydia/*classification/genetics/*isolation & purification, Chlorocebus aethiops, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Microscopy, Electron, Transmission, Molecular Sequence Data, Phylogeny, Poultry/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA | Genetics |
| Genetics | 27445388 | Whole-Genome Sequence of Chlamydia gallinacea Type Strain 08-1274/3. | Holzer M, Laroucau K, Creasy HH, Ott S, Vorimore F, Bavoil PM, Marz M, Sachse K | Genome Announc | 10.1128/genomeA.00708-16 | 2016 | ||
| Genetics | 29212448 | From genomes to genotypes: molecular epidemiological analysis of Chlamydia gallinacea reveals a high level of genetic diversity for this newly emerging chlamydial pathogen. | Guo W, Jelocnik M, Li J, Sachse K, Polkinghorne A, Pannekoek Y, Kaltenboeck B, Gong J, You J, Wang C | BMC Genomics | 10.1186/s12864-017-4343-9 | 2017 | Animals, Bacterial Proteins/*genetics, *Chickens, China, Chlamydia/*genetics/pathogenicity, Chlamydia Infections/epidemiology/genetics/microbiology/*veterinary, *Genetic Variation, *Genome, Bacterial, Genotype, Molecular Epidemiology, Multilocus Sequence Typing/methods, Phylogeny, Poultry Diseases/epidemiology/genetics/*microbiology, Sequence Analysis, DNA/methods | Phylogeny |
| Phylogeny | 34389764 | Genetic and phenotypic analysis of the pathogenic potential of two novel Chlamydia gallinacea strains compared to Chlamydia psittaci. | Heijne M, Jelocnik M, Umanets A, Brouwer MSM, Dinkla A, Harders F, van Keulen LJM, Roest HJ, Schaafsma F, Velkers FC, van der Goot JA, Pannekoek Y, Koets AP | Sci Rep | 10.1038/s41598-021-95966-9 | 2021 | Animals, Chick Embryo, Chickens/microbiology, Chlamydia/genetics/*pathogenicity, Chlamydia Infections/microbiology/*veterinary, Chlamydophila psittaci/genetics/*pathogenicity, Genetic Association Studies, Phylogeny, Poultry Diseases/*microbiology, Psittacosis/microbiology/*veterinary, Virulence/genetics |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 67640 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-27451 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 27451) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 112953 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID403081.1 |