Chlamydia gallinacea (DSM 27451, CSUR P3509, 08-1274/3)

Name: Chlamydia gallinacea (DSM 27451, CSUR P3509, 08-1274/3)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 160727

Type strain

Strain Designation 08-1274/3

Culture col. no. DSM 27451 CSUR P3509 08-1274/3

NCBI tax ID(s) 1457153

Special Collections DSMZ

Links

Chlamydia gallinacea 08-1274/3 is a mesophilic animal pathogen that was isolated from cloacal swab from a chicken without clinical signs.

mesophilic animal pathogen genome sequence 16S sequence

Name and taxonomic classification

SI-ID 403081

DSM 27451

@ref 20215

Last LPSN update 2025-12-16 10:08:34

Domain Pseudomonadati

Phylum Chlamydiota

Class Chlamydiia

Order Chlamydiales

Family Chlamydiaceae

Genus Chlamydia

Species Chlamydia gallinacea

Full scientific name Chlamydia gallinacea Sachse et al. 2015

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	99.7

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
67640	CULTIVATION MEDIUM FOR CHLAMYDIAE (DSMZ Medium 1193)		Medium recipe at MediaDive	Name: CULTIVATION MEDIUM FOR CHLAMYDIAE (DSMZ Medium 1193) Composition: Aminoacids Fetal bovine serum IMDM-Medium

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
67640	positive	growth	37	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	93.1

Spore formation

@ref	Spore formation	Confidence
125439		99.7
125438		94.352

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
67640	cloacal swab from a chicken (Gallus gallus; Barbezieux) without clinical signs	France	FRA	Europe

Taxonmaps

69479

Global distribution of 16S sequence GQ398026 (>99% sequence identity) for Chlamydia gallinacea from Microbeatlas

Aquatic Samples	15
Soil Samples	8
Animal Samples	270
Plant Samples	1
Total Samples	294

Interaction and safety

Risk assessment

@ref	Pathogenicity animal	Biosafety level	Biosafety level comment
67640		2	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM47102v2 assembly for Chlamydia gallinacea 08-1274/3	complete	GCA_000471025	1143323.6	2806310688	1143323	98.38
66792	Chlamydia gallinacea 08-1274/3	contig		1143323.3		1143323	77.4

Genome browser: GCA_000471025

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67640	Chlamydia gallinacea 08-1274/3 16S ribosomal RNA gene, partial sequence	GQ398026	1436		1143323

GC content

@ref	GC-content (mol%)	Method
67640	37.9	sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Chlamydia gallinacea 08-1274/3
PATRIC: 1143323.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	93.10	no
125439	gram_stain	BacteriaNetⓘ	negative	99.70	no
125439	motility	BacteriaNetⓘ	yes	56.70	no
125439	spore_formation	BacteriaNetⓘ	no	99.70	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Chlamydia gallinacea 08-1274/3 08-1274/3
NCBI: GCA_000471025.2

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	86.14	no
125438	anaerobic	anaerobicⓘ	no	66.95	no
125438	aerobic	aerobicⓘ	no	81.48	no
125438	spore-forming	spore-formingⓘ	no	94.35	no
125438	thermophilic	thermophileⓘ	no	94.37	yes
125438	flagellated	motile2+ⓘ	no	74.81	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Genetic and phenotypic analysis of the pathogenic potential of two novel Chlamydia gallinacea strains compared to Chlamydia psittaci.	Heijne M, Jelocnik M, Umanets A, Brouwer MSM, Dinkla A, Harders F, van Keulen LJM, Roest HJ, Schaafsma F, Velkers FC, van der Goot JA, Pannekoek Y, Koets AP	Sci Rep	10.1038/s41598-021-95966-9	2021
Genetics	From genomes to genotypes: molecular epidemiological analysis of Chlamydia gallinacea reveals a high level of genetic diversity for this newly emerging chlamydial pathogen.	Guo W, Jelocnik M, Li J, Sachse K, Polkinghorne A, Pannekoek Y, Kaltenboeck B, Gong J, You J, Wang C	BMC Genomics	10.1186/s12864-017-4343-9	2017
Genetics	Whole-Genome Sequence of Chlamydia gallinacea Type Strain 08-1274/3.	Holzer M, Laroucau K, Creasy HH, Ott S, Vorimore F, Bavoil PM, Marz M, Sachse K	Genome Announc	10.1128/genomeA.00708-16	2016
Phylogeny	Evidence for the existence of two new members of the family Chlamydiaceae and proposal of Chlamydia avium sp. nov. and Chlamydia gallinacea sp. nov.	Sachse K, Laroucau K, Riege K, Wehner S, Dilcher M, Creasy HH, Weidmann M, Myers G, Vorimore F, Vicari N, Magnino S, Liebler-Tenorio E, Ruettger A, Bavoil PM, Hufert FT, Rossello-Mora R, Marz M	Syst Appl Microbiol	10.1016/j.syapm.2013.12.004	2014

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67640	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 27451
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Chlamydia gallinacea (DSM 27451, CSUR P3509, 08-1274/3)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000471025

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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