Name: Chlamydia gallinacea 08-1274/3
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 160727

Type strain:

Species: Chlamydia gallinacea

Strain Designation: 08-1274/3

Culture col. no.: DSM 27451, CSUR P3509

Strain history: <- K. Laroucau, Anses, Maisons-Alfort, France; 08-1274/3 <- F. Vorimore and K. Laroucau, Anses, Maisons-Alfort, France;

NCBI tax ID(s): 1457153 (species)

SI-ID 403081

DSM 27451

Section

Chlamydia gallinacea 08-1274/3 is a mesophilic animal pathogen that was isolated from cloacal swab from a chicken without clinical signs.

animal pathogen
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Chlamydiota*
	Class	*Chlamydiia*
	Order	*Chlamydiales*
	Family	*Chlamydiaceae*
	Genus	*Chlamydia*
	Species	**Chlamydia gallinacea**
	Full Scientific Name (LPSN)	Chlamydia gallinacea Sachse et al. 2015

Information on culture and growth conditions Culture and growth conditions

[Ref.: #67640]

Culture medium

CULTIVATION MEDIUM FOR CHLAMYDIAE (DSMZ Medium 1193)

[Ref.: #67640]

Culture medium growth

[Ref.: #67640]

Culture medium link

Medium recipe at MediaDive

[Ref.: #67640]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #67640]			growth	37 °C

[Ref.: #67640]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67640]	Sample type/isolated from	cloacal swab from a chicken (Gallus gallus; Barbezieux) without clinical signs
[Ref.: #67640]	Country	France
[Ref.: #67640]	Country ISO 3 Code	FRA
[Ref.: #67640]	Continent	Europe
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence GQ398026 (>99% sequence identity) for Chlamydia gallinacea from Microbeatlas

Aquatic Samples	15
Soil Samples	8
Animal Samples	270
Plant Samples	1
Total Samples	294

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #67640]	Pathogenicity (animal)	yes
[Ref.: #67640]	Biosafety level	2	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67640]	Chlamydia gallinacea 08-1274/3 16S ribosomal RNA gene, partial sequence	GQ398026	1436	ENA	1143323 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Chlamydia gallinacea 08-1274/3	GCA_000471025	complete	GenBank	1143323 tax ID	*
[Ref.: #66792]	Chlamydia gallinacea 08-1274/3	1143323.4	plasmid	PATRIC	1143323 tax ID	*
[Ref.: #66792]	Chlamydia gallinacea 08-1274/3	1143323.3	wgs	PATRIC	1143323 tax ID	*

[Ref.: #67640]

GC-content

37.9 mol%

sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Chlamydia gallinacea 08-1274/3 08-1274/3 NCBI: GCA_000471025.1
[Ref.: #69480]	motile	no	66.603	no
[Ref.: #69480]	flagellated	no	96.075	no
[Ref.: #69480]	gram-positive	no	96.768	no
[Ref.: #69480]	anaerobic	no	65.945	no
[Ref.: #69480]	aerobic	no	91.311	no
[Ref.: #69480]	halophile	yes	52.984	no
[Ref.: #69480]	spore-forming	no	97.575	no
[Ref.: #69480]	glucose-util	yes	75.805	no
[Ref.: #69480]	thermophile	no	81.28	no
[Ref.: #69480]	glucose-ferment	yes	50.692	no
[Ref.: #69480]	motile	no	66.603	no
[Ref.: #69480]	flagellated	no	96.075	no
[Ref.: #69480]	gram-positive	no	96.768	no
[Ref.: #69480]	anaerobic	no	65.945	no
[Ref.: #69480]	aerobic	no	91.311	no
[Ref.: #69480]	halophile	yes	52.984	no
[Ref.: #69480]	spore-forming	no	97.575	no
[Ref.: #69480]	glucose-util	yes	75.805	no
[Ref.: #69480]	thermophile	no	81.28	no
[Ref.: #69480]	glucose-ferment	yes	50.692	no

Availability in culture collections External links

[Ref.: #67640]

Culture collection no.

DSM 27451, CSUR P3509

[Ref.: #112953]

SI-ID 403081

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Genetic and phenotypic analysis of the pathogenic potential of two novel Chlamydia gallinacea strains compared to Chlamydia psittaci.	Heijne M, Jelocnik M, Umanets A, Brouwer MSM, Dinkla A, Harders F, van Keulen LJM, Roest HJ, Schaafsma F, Velkers FC, van der Goot JA, Pannekoek Y, Koets AP	Sci Rep	10.1038/s41598-021-95966-9	2021	*
Genetics	From genomes to genotypes: molecular epidemiological analysis of Chlamydia gallinacea reveals a high level of genetic diversity for this newly emerging chlamydial pathogen.	Guo W, Jelocnik M, Li J, Sachse K, Polkinghorne A, Pannekoek Y, Kaltenboeck B, Gong J, You J, Wang C	BMC Genomics	10.1186/s12864-017-4343-9	2017	*
Genetics	Whole-Genome Sequence of Chlamydia gallinacea Type Strain 08-1274/3.	Holzer M, Laroucau K, Creasy HH, Ott S, Vorimore F, Bavoil PM, Marz M, Sachse K	Genome Announc	10.1128/genomeA.00708-16	2016	*
Phylogeny	Evidence for the existence of two new members of the family Chlamydiaceae and proposal of Chlamydia avium sp. nov. and Chlamydia gallinacea sp. nov.	Sachse K, Laroucau K, Riege K, Wehner S, Dilcher M, Creasy HH, Weidmann M, Myers G, Vorimore F, Vicari N, Magnino S, Liebler-Tenorio E, Ruettger A, Bavoil PM, Hufert FT, Rossello-Mora R, Marz M	Syst Appl Microbiol	10.1016/j.syapm.2013.12.004	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67640

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 27451

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#112953

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID403081.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Chlamydia gallinacea in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Chlamydia gallinacea 08-1274/3 08-1274/3

Change proposal

Change proposal