Strain identifier
BacDive ID: 16067
Type strain:
Species: Streptomyces venezuelae
Strain Designation: P.D. 04745 = Burkholder
Strain history: KCC S-0526 <-- IFO 13096 <-- SAJ <-- ISP 5230 <-- L. Anderson PD 04745 (A65).
NCBI tax ID(s): 953739 (strain), 54571 (species)
General
@ref: 9391
BacDive-ID: 16067
DSM-Number: 40230
keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic, antibiotic compound production
description: Streptomyces venezuelae P.D. 04745 = Burkholder is a spore-forming, mesophilic bacterium that produces antibiotic compounds and was isolated from tropical soil.
NCBI tax id
NCBI tax id | Matching level |
---|---|
54571 | species |
953739 | strain |
strain history
@ref | history |
---|---|
9391 | <- E.B. Shirling, ISP <- L. Anderson, Park Davies & Co., PD 04745 <- P. R. Burkholder, A-65 |
67770 | KCC S-0526 <-- IFO 13096 <-- SAJ <-- ISP 5230 <-- L. Anderson PD 04745 (A65). |
doi: 10.13145/bacdive16067.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces venezuelae
- full scientific name: Streptomyces venezuelae Ehrlich et al. 1948 (Approved Lists 1980)
@ref: 9391
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces venezuelae
full scientific name: Streptomyces venezuelae Ehrlich et al. 1948 emend. Nouioui et al. 2018
strain designation: P.D. 04745 = Burkholder
type strain: yes
Morphology
cell morphology
@ref | motility | confidence | gram stain |
---|---|---|---|
69480 | no | 93.91 | |
69480 | 100 | positive |
multimedia
- @ref: 9391
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_40230.jpg
- caption: Medium 65 28°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
9391 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
9391 | ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium84.pdf |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
9391 | positive | growth | 28 | mesophilic |
18563 | positive | optimum | 30 | mesophilic |
67770 | positive | growth | 28 | mesophilic |
Physiology and metabolism
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | yes | 100 |
69480 | yes | 100 |
compound production
@ref | compound |
---|---|
9391 | chloramphenicol |
9391 | jadomycin B |
20216 | Chloramphenicol (Chloromycetin, Synthomycin, Levomycetin, Antibiotic 8-47) |
halophily
- @ref: 18563
- salt: NaCl
- growth: positive
- tested relation: maximum
- concentration: 2.5 %
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
18563 | 17234 | glucose | + | |
18563 | 22599 | arabinose | + | |
18563 | 17992 | sucrose | - | |
18563 | 18222 | xylose | - | |
18563 | 17268 | myo-inositol | - | |
18563 | 29864 | mannitol | - | |
18563 | 28757 | fructose | +/- | |
18563 | 26546 | rhamnose | +/- | |
18563 | 16634 | raffinose | - | |
18563 | 62968 | cellulose | - | |
68368 | 5291 | gelatin | + | hydrolysis |
68368 | 27897 | tryptophan | - | energy source |
68368 | 16199 | urea | - | hydrolysis |
68368 | 16947 | citrate | + | assimilation |
68368 | 18257 | ornithine | - | degradation |
68368 | 25094 | lysine | - | degradation |
68368 | 29016 | arginine | - | hydrolysis |
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
67770 | 17698 | chloramphenicol | yes |
68368 | 15688 | acetoin | no |
68368 | 35581 | indole | no |
68368 | 16136 | hydrogen sulfide | yes |
metabolite tests
@ref | Chebi-ID | metabolite | voges-proskauer-test | indole test |
---|---|---|---|---|
68368 | 15688 | acetoin | - | |
68368 | 35581 | indole | - |
enzymes
@ref | value | activity | ec |
---|---|---|---|
68368 | gelatinase | + | |
68368 | tryptophan deaminase | - | 4.1.99.1 |
68368 | urease | - | 3.5.1.5 |
68368 | ornithine decarboxylase | - | 4.1.1.17 |
68368 | lysine decarboxylase | - | 4.1.1.18 |
68368 | arginine dihydrolase | - | 3.5.3.6 |
68368 | beta-galactosidase | + | 3.2.1.23 |
API 20E
@ref | ONPG | ADH Arg | LDC Lys | ODC | CIT | H2S | URE | TDA Trp | IND | VP | GEL |
---|---|---|---|---|---|---|---|---|---|---|---|
18563 | + | - | - | - | + | + | - | - | - | - | + |
Isolation, sampling and environmental information
isolation
- @ref: 9391
- sample type: tropical soil
- geographic location: Caracas
- country: Venezuela
- origin.country: VEN
- continent: Middle and South America
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Terrestrial | #Soil |
#Climate | #Hot | #Tropical |
taxonmaps
- @ref: 69479
- File name: preview.99_490.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_102;97_109;98_403;99_490&stattab=map
- Last taxonomy: Streptomyces
- 16S sequence: AB045890
- Sequence Identity:
- Total samples: 9252
- soil counts: 6254
- aquatic counts: 336
- animal counts: 471
- plant counts: 2191
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
9391 | 1 | Risk group (German classification) |
18563 | 1 | German classification |
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Streptomyces venezuelae ATCC 10712 strain ISP 5230 16S ribosomal RNA gene, partial sequence | AY999739 | 1448 | ena | 953739 |
20218 | Streptomyces venezuelae gene for 16S rRNA | AB045890 | 1483 | ena | 54571 |
20218 | Streptomyces venezuelae gene for 16S ribosomal RNA, partial sequence, strain: JCM 4526 | D44213 | 120 | ena | 54571 |
20218 | Streptomyces venezuelae gene for 16S rRNA, partial sequence, strain: NBRC 12595 | AB184836 | 1464 | ena | 54571 |
20218 | Streptomyces venezuelae gene for 16S rRNA, partial sequence, strain: NBRC 13096 | AB184308 | 1469 | ena | 54571 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Streptomyces venezuelae ATCC 10712 | GCA_008639165 | complete | ncbi | 953739 |
66792 | Streptomyces venezuelae ATCC 10712 | GCA_000253235 | chromosome | ncbi | 953739 |
66792 | Streptomyces venezuelae ATCC 10712 | 953739.5 | complete | patric | 953739 |
66792 | Streptomyces venezuelae ATCC 10712 | 953739.44 | complete | patric | 953739 |
66792 | Streptomyces venezuelae ISP5230 | 2582581599 | draft | img | 953739 |
66792 | Streptomyces venezuelae Shinobu 719, ATCC 10712 | 2524023215 | complete | img | 953739 |
66792 | Streptomyces venezuelae ISP 5230 | 2582581598 | draft | img | 953739 |
66792 | Streptomyces venezuelae ATCC 10712 | GCA_021432215 | contig | ncbi | 953739 |
GC content
- @ref: 67770
- GC-content: 72.5
- method: genome sequence analysis
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | yes | 100 | no |
motile | no | 93.807 | no |
flagellated | no | 96.874 | no |
gram-positive | yes | 87.323 | no |
anaerobic | no | 99.389 | no |
aerobic | yes | 92.828 | no |
halophile | no | 95.135 | no |
spore-forming | yes | 93.481 | no |
thermophile | no | 99.042 | yes |
glucose-util | yes | 90.827 | no |
glucose-ferment | no | 87.519 | no |
External links
@ref: 9391
culture collection no.: DSM 40230, ATCC 10712, ATCC 25508, CBS 650.69, DSM 41109, ETH 26169, IFO 12595, IFO 13096, IMET 41356, IMRU 3534, IMRU 3625, ISP 5230, JCM 4526, KCC S-0526, NBRC 12595, NBRC 13096, NRRL B-2277, RIA 1288, VKM Ac-589, BCRC 11512, CGMCC 4.1526, LMG 19308, NRRL 2277, RIA 70
straininfo link
- @ref: 85138
- straininfo: 38564
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Enzymology | 2040427 | Molecular cloning of the genes for anthranilate synthetase from Streptomyces venezuelae ISP 5230. | Paradkar AS, Stuttard C, Vining LC | FEMS Microbiol Lett | 10.1016/0378-1097(91)90154-3 | 1991 | Anthranilate Synthase/*genetics/metabolism, Blotting, Southern, Cloning, Molecular, Escherichia coli/genetics, *Genes, Bacterial, Restriction Mapping, Streptomyces/enzymology/*genetics, Transformation, Bacterial, Tryptophan/genetics | Metabolism |
Metabolism | 2324705 | Chloramphenicol resistance in Streptomyces: cloning and characterization of a chloramphenicol hydrolase gene from Streptomyces venezuelae. | Mosher RH, Ranade NP, Schrempf H, Vining LC | J Gen Microbiol | 10.1099/00221287-136-2-293 | 1990 | Amidohydrolases/*genetics, Blotting, Southern, Chloramphenicol/metabolism, Chloramphenicol Resistance/*genetics, *Cloning, Molecular, DNA, Bacterial, *Genes, Bacterial, Nucleic Acid Hybridization, Plasmids, Streptomyces/drug effects/*genetics/metabolism | Enzymology |
Pathogenicity | 2391493 | Sporulation of Streptomyces venezuelae in submerged cultures. | Glazebrook MA, Doull JL, Stuttard C, Vining LC | J Gen Microbiol | 10.1099/00221287-136-3-581 | 1990 | Adenosine/analogs & derivatives/pharmacology, Ammonium Sulfate/pharmacology, Anti-Bacterial Agents/*pharmacology, Carbon/pharmacology, Galactose/pharmacology, Mutation, Nitrogen/pharmacology, Spores, Bacterial/drug effects/physiology/ultrastructure, Streptomyces/drug effects/genetics/*physiology/ultrastructure | |
Metabolism | 2398345 | Plasmid transformation of Streptomyces venezuelae: modified procedures used to introduce the gene(s) for p-aminobenzoate synthase. | Aidoo DA, Barrett K, Vining LC | J Gen Microbiol | 10.1099/00221287-136-4-657 | 1990 | 4-Aminobenzoic Acid/metabolism, Chloramphenicol/metabolism, DNA, Bacterial/genetics, Genes, Bacterial, Mutation, Plasmids/*genetics, Protoplasts/metabolism, Restriction Mapping, Streptomyces/*genetics, Sucrose, Transaminases/*genetics, *Transformation, Bacterial | |
Enzymology | 2628543 | Purification, properties and immunological detection of a bromoperoxidase-catalase from Streptomyces venezuelae and from a chloramphenicol-nonproducing mutant. | Knoch M, van Pee KH, Vining LC, Lingens F | J Gen Microbiol | 10.1099/00221287-135-9-2493 | 1989 | Catalase/immunology/*isolation & purification, Chemical Phenomena, Chemistry, Chloramphenicol/*metabolism, Chromatography, Agarose, Chromatography, Ion Exchange, Electrophoresis, Polyacrylamide Gel, Mutation, Peroxidases/immunology/*isolation & purification, Streptomyces/*enzymology | Phylogeny |
Metabolism | 7592375 | Regulation of jadomycin B production in Streptomyces venezuelae ISP5230: involvement of a repressor gene, jadR2. | Yang K, Han L, Vining LC | J Bacteriol | 10.1128/jb.177.21.6111-6117.1995 | 1995 | Amino Acid Sequence, Anti-Bacterial Agents/*metabolism, Bacterial Proteins/*genetics, Base Sequence, Chromosomes, Bacterial, Ethanol/pharmacology, Gene Expression Regulation, Bacterial, *Genes, Bacterial, Isoquinolines/metabolism, Molecular Sequence Data, Multienzyme Complexes/genetics, Mutagenesis, Repressor Proteins/*genetics, Restriction Mapping, Sequence Analysis, DNA, Sequence Homology, Amino Acid, Streptomyces/drug effects/*genetics/metabolism, *Transcription Factors | Genetics |
Metabolism | 7592948 | Inactivation of chloramphenicol by O-phosphorylation. A novel resistance mechanism in Streptomyces venezuelae ISP5230, a chloramphenicol producer. | Mosher RH, Camp DJ, Yang K, Brown MP, Shaw WV, Vining LC | J Biol Chem | 10.1074/jbc.270.45.27000 | 1995 | Amino Acid Sequence, Anti-Bacterial Agents/*antagonists & inhibitors/chemistry/*metabolism, *Bacterial Proteins, Base Sequence, Chloramphenicol/*antagonists & inhibitors/chemistry/*metabolism, Cloning, Molecular, DNA, Bacterial/genetics, Drug Resistance, Microbial/genetics, Gene Expression, Molecular Sequence Data, Molecular Structure, Open Reading Frames, Phosphorylation, Phosphotransferases (Alcohol Group Acceptor)/genetics/metabolism, Sequence Homology, Amino Acid, Streptomyces/drug effects/genetics/*metabolism | Enzymology |
Metabolism | 7764672 | Conditions for the production of jadomycin B by Streptomyces venezuelae ISP5230: effects of heat shock, ethanol treatment and phage infection. | Doull JL, Singh AK, Hoare M, Ayer SW | J Ind Microbiol | 10.1007/BF01584109 | 1994 | Anti-Bacterial Agents/*metabolism, *Bacteriophages, Culture Media/chemistry, Ethanol/*pharmacology, *Hot Temperature, Hydrogen-Ion Concentration, Isoquinolines/metabolism, Streptomyces/drug effects/*metabolism, Time Factors | Stress |
Enzymology | 7881555 | Cloning and characterization of polyketide synthase genes for jadomycin B biosynthesis in Streptomyces venezuelae ISP5230. | Han L, Yang K, Ramalingam E, Mosher RH, Vining LC | Microbiology (Reading) | 10.1099/13500872-140-12-3379 | 1994 | Amino Acid Sequence, Anti-Bacterial Agents/*biosynthesis, Base Sequence, Cloning, Molecular, DNA, Bacterial/genetics, *Genes, Bacterial, Isoquinolines/metabolism, Molecular Sequence Data, Multienzyme Complexes/*genetics, Multigene Family, Nucleic Acid Hybridization, Open Reading Frames, Restriction Mapping, Sequence Homology, Amino Acid, Streptomyces/enzymology/*genetics/*metabolism | Metabolism |
Enzymology | 8013882 | Cloning and sequence analysis of a recA-like gene from Streptomyces venezuelae ISP5230. | Yao W, Vining LC | FEMS Microbiol Lett | 10.1111/j.1574-6968.1994.tb06802.x | 1994 | Amino Acid Sequence, Base Sequence, Cloning, Molecular, DNA, Bacterial/analysis, Escherichia coli/drug effects/genetics, Ethyl Methanesulfonate/pharmacology, Genes, Bacterial/*genetics, Molecular Sequence Data, Open Reading Frames/genetics, Rec A Recombinases/chemistry/*genetics, Restriction Mapping, Sequence Alignment, Sequence Analysis, DNA, Streptomyces/chemistry/*genetics | Transcriptome |
Enzymology | 8515229 | Location of the genes for anthranilate synthase in Streptomyces venezuelae ISP5230: genetic mapping after integration of the cloned genes. | Paradkar AS, Stuttard C, Vining LC | J Gen Microbiol | 10.1099/00221287-139-4-687 | 1993 | Anthranilate Synthase/*genetics, Chromosome Mapping, Chromosomes, Bacterial, Cloning, Molecular, DNA, Bacterial/genetics, *Genes, Bacterial, Genetic Markers, Plasmids, Streptomyces/*enzymology/*genetics, Transduction, Genetic | |
Enzymology | 8704974 | A role for pabAB, a p-aminobenzoate synthase gene of Streptomyces venezuelae ISP5230, in chloramphenicol biosynthesis. | Brown MP, Aidoo KA, Vining LC | Microbiology (Reading) | 10.1099/13500872-142-6-1345 | 1996 | Amino Acid Sequence, Bacterial Proteins/genetics/*physiology, Base Sequence, Candicidin/biosynthesis, Chloramphenicol/*biosynthesis, Chorismic Acid/metabolism, Chromosomes, Bacterial/genetics, Cloning, Molecular, Evolution, Molecular, *Genes, Bacterial, Molecular Sequence Data, Sequence Alignment, Sequence Homology, Amino Acid, Streptomyces/*enzymology/genetics, Transaminases/genetics/*physiology, Transformation, Bacterial | Genetics |
Enzymology | 8868441 | Cloning, sequencing and disruption of a bromoperoxidase-catalase gene in Streptomyces venezuelae: evidence that it is not required for chlorination in chloramphenicol biosynthesis. | Facey SJ, Gross F, Vining LC, Yang K, van Pe KH | Microbiology (Reading) | 10.1099/13500872-142-3-657 | 1996 | Amino Acid Sequence, Base Sequence, Chloramphenicol/*metabolism, Cloning, Molecular, DNA, Fungal, Molecular Sequence Data, Mutation, Peroxidases/*genetics/metabolism, Sequence Alignment, Streptomyces/*genetics/metabolism | Metabolism |
Enzymology | 9695930 | Regulation of an anthranilate synthase gene in Streptomyces venezuelae by a trp attenuator. | Lin C, Paradkar AS, Vining LC | Microbiology (Reading) | 10.1099/00221287-144-7-1971 | 1998 | Anthranilate Synthase/chemistry/*genetics/metabolism, Anticonvulsants/analysis, Base Sequence, Blotting, Southern, Cloning, Molecular, Escherichia coli/genetics, Gene Deletion, Genes, Bacterial/*genetics, Molecular Sequence Data, Open Reading Frames/genetics, Phenotype, Pseudomonas/genetics, Streptomyces/enzymology/*genetics, *Transformation, Genetic, Tryptophan/biosynthesis/genetics, ortho-Aminobenzoates/analysis | Genetics |
Enzymology | 10216290 | Cubic crystals of chloramphenicol phosphotransferase from Streptomyces venezuelae in complex with chloramphenicol. | Ellis J, Campopiano DJ, Izard T | Acta Crystallogr D Biol Crystallogr | 10.1107/s0907444999003029 | 1999 | *Bacterial Proteins, Chloramphenicol/*chemistry, Crystallization, Crystallography, X-Ray, Escherichia coli/genetics/metabolism, Phosphotransferases (Alcohol Group Acceptor)/*chemistry/genetics/isolation & purification, Recombinant Proteins/chemistry, Streptomyces/*enzymology | Metabolism |
Metabolism | 10784049 | An acyl-coenzyme A carboxylase encoding gene associated with jadomycin biosynthesis in Streptomyces venezuelae ISP5230. | Han L, Yang K, Kulowski K, Wendt-Pienkowski E, Hutchinson CR, Vining LC | Microbiology (Reading) | 10.1099/00221287-146-4-903 | 2000 | Amino Acid Sequence, Carbon-Carbon Ligases/*genetics/metabolism, Gene Expression Regulation, Bacterial, Isoquinolines/*metabolism, Molecular Sequence Data, Sequence Alignment, Streptomyces/*genetics/*metabolism | Genetics |
Enzymology | 11390684 | Cloning and functional analysis of a phosphopantetheinyl transferase superfamily gene associated with jadomycin biosynthesis in Streptomyces venezuelae ISP5230. | Wang L, McVey J, Vining LC | Microbiology (Reading) | 10.1099/00221287-147-6-1535 | 2001 | Amino Acid Sequence, Blotting, Northern, Blotting, Southern, Cloning, Molecular, Electrophoresis, Polyacrylamide Gel, *Genes, Bacterial, Hydrogen-Ion Concentration, Isoquinolines/*metabolism, Molecular Sequence Data, Open Reading Frames, Sequence Analysis, DNA, Sequence Homology, Amino Acid, Streptomyces/enzymology/*genetics/metabolism, Transferases (Other Substituted Phosphate Groups)/*genetics/metabolism | Metabolism |
Metabolism | 11495988 | The pdx genetic marker adjacent to the chloramphenicol biosynthesis gene cluster in Streptomyces venezuelae ISP5230: functional characterization. | Magarvey N, He J, Aidoo KA, Vining LC | Microbiology (Reading) | 10.1099/00221287-147-8-2103 | 2001 | Amino Acid Sequence, Bacterial Proteins/chemistry/*genetics/metabolism, Chloramphenicol/*biosynthesis, Gene Deletion, Gene Expression Regulation, Bacterial, *Genes, Bacterial, *Genes, Regulator, Genetic Complementation Test, *Genetic Markers, Molecular Sequence Data, Multigene Family, Plasmids/genetics, Sequence Analysis, DNA, Streptomyces/*genetics/metabolism, Transformation, Genetic | Genetics |
Enzymology | 11495989 | p-Aminobenzoic acid and chloramphenicol biosynthesis in Streptomyces venezuelae: gene sets for a key enzyme, 4-amino-4-deoxychorismate synthase. | Chang Z, Sun Y, He J, Vining LC | Microbiology (Reading) | 10.1099/00221287-147-8-2113 | 2001 | 4-Aminobenzoic Acid/*metabolism, Amino Acid Sequence, Carbon-Nitrogen Ligases, Chloramphenicol/*biosynthesis, Cloning, Molecular, Deoxyribonucleases, Type II Site-Specific/metabolism, Molecular Sequence Data, Sequence Alignment, Sequence Analysis, DNA, Streptomyces/*enzymology/genetics, Transaminases/chemistry/*genetics/*metabolism | Metabolism |
Metabolism | 11577160 | The gene cluster for chloramphenicol biosynthesis in Streptomyces venezuelae ISP5230 includes novel shikimate pathway homologues and a monomodular non-ribosomal peptide synthetase gene. | He J, Magarvey N, Piraee M, Vining LC | Microbiology (Reading) | 10.1099/00221287-147-10-2817 | 2001 | Amino Acid Sequence, Bacterial Proteins/chemistry/*genetics, Carbon-Nitrogen Ligases, Chloramphenicol/*biosynthesis, Chromosome Walking, Cloning, Molecular, Gene Deletion, *Genes, Bacterial, Genetic Complementation Test, Molecular Sequence Data, Multigene Family, Mutation, Sequence Analysis, DNA, Shikimic Acid/*metabolism, Streptomyces/*genetics/metabolism, Transaminases/*genetics/metabolism | Enzymology |
Metabolism | 11733141 | A repressor-response regulator gene pair controlling jadomycin B production in Streptomyces venezuelae ISP5230. | Yang K, Han L, He J, Wang L, Vining LC | Gene | 10.1016/s0378-1119(01)00723-5 | 2001 | Alleles, Amino Acid Sequence, Base Sequence, DNA, Bacterial/chemistry/genetics, Gene Dosage, Genes, Regulator/*genetics/physiology, Isoquinolines/*metabolism, Molecular Sequence Data, Mutation, Sequence Alignment, Sequence Analysis, DNA, Sequence Homology, Amino Acid, Streptomyces/*genetics/metabolism | Genetics |
Genetics | 11932454 | Biosynthesis of the dideoxysugar component of jadomycin B: genes in the jad cluster of Streptomyces venezuelae ISP5230 for L-digitoxose assembly and transfer to the angucycline aglycone. | Wang L, White RL, Vining LC | Microbiology (Reading) | 10.1099/00221287-148-4-1091 | 2002 | Amino Acid Sequence, Anti-Bacterial Agents/*chemical synthesis, Chromosome Walking, Chromosomes, Fungal/*genetics, Cloning, Molecular, Conjugation, Genetic, Deoxy Sugars/*biosynthesis, Diploidy, Escherichia coli/genetics, Genetic Complementation Test, Genotype, Hexoses/*biosynthesis, Introns, Isoquinolines/*metabolism, Molecular Sequence Data, *Multigene Family, Phenotype, Promoter Regions, Genetic, Restriction Mapping, Sequence Alignment, Sequence Homology, Amino Acid, Streptomyces/*genetics | Enzymology |
Genetics | 12080419 | Use of degenerate primers and touchdown PCR to amplify a halogenase gene fragment from Streptomyces venezuelae ISP5230. | Piraee M, Vining LC | J Ind Microbiol Biotechnol | 10.1038/sj.jim.7000263 | 2002 | Amino Acid Sequence, Blotting, Southern, DNA Primers/*genetics, Genes, Bacterial/*genetics, Molecular Sequence Data, Oxidoreductases/chemistry/*genetics, Polymerase Chain Reaction/*methods, Sensitivity and Specificity, Sequence Homology, Amino Acid, Streptomyces/classification/enzymology/*genetics | Enzymology |
Enzymology | 12101301 | Biosynthesis of sulfur-containing amino acids in Streptomyces venezuelae ISP5230: roles for cystathionine beta-synthase and transsulfuration. | Chang Z, Vining LC | Microbiology (Reading) | 10.1099/00221287-148-7-2135 | 2002 | Amino Acid Sequence, Cloning, Molecular, Culture Media, Cystathionine beta-Synthase/*genetics/*metabolism, Cysteine/*biosynthesis, Cysteine Synthase/genetics/metabolism, Gene Deletion, Genetic Complementation Test, Methionine/biosynthesis, Molecular Sequence Data, Sequence Analysis, DNA, Serine/biosynthesis, Streptomyces/*enzymology/genetics/growth & development, Sulfur/*metabolism | Metabolism |
Metabolism | 12904539 | Control of growth, secondary metabolism and sporulation in Streptomyces venezuelae ISP5230 by jadW(1), a member of the afsA family of gamma-butyrolactone regulatory genes. | Wang L, Vining LC | Microbiology (Reading) | 10.1099/mic.0.26209-0 | 2003 | 4-Butyrolactone/*metabolism, Amino Acid Sequence, Cloning, Molecular, DNA, Bacterial/genetics, Genes, Bacterial, Genes, Regulator, Genetic Complementation Test, Molecular Sequence Data, Multigene Family, Mutation, Phenotype, Receptors, GABA-A/genetics/metabolism, Sequence Homology, Amino Acid, Spores, Bacterial/physiology, Streptomyces/*genetics/*physiology | Enzymology |
Enzymology | 14702400 | Biosynthesis of the dichloroacetyl component of chloramphenicol in Streptomyces venezuelae ISP5230: genes required for halogenation. | Piraee M, White RL, Vining LC | Microbiology (Reading) | 10.1099/mic.0.26319-0 | 2004 | Amino Acid Sequence, Base Sequence, Chloramphenicol/*biosynthesis/chemistry, Cloning, Molecular, DNA, Bacterial/genetics, *Genes, Bacterial, Genetic Complementation Test, Halogens/metabolism, Molecular Sequence Data, Multigene Family, Mutation, Open Reading Frames, Oxidoreductases/genetics/metabolism, Phylogeny, Sequence Homology, Amino Acid, Streptomyces/*genetics/*metabolism, Transformation, Genetic | Metabolism |
Metabolism | 15070349 | The dynamic structure of jadomycin B and the amino acid incorporation step of its biosynthesis. | Rix U, Zheng J, Remsing Rix LL, Greenwell L, Yang K, Rohr J | J Am Chem Soc | 10.1021/ja031724o | 2004 | Amino Acids/chemistry/*metabolism, Hydrogen Bonding, Isoleucine/chemistry/metabolism, Isoquinolines/chemistry/*metabolism, Models, Molecular, Molecular Conformation, Nuclear Magnetic Resonance, Biomolecular, Stereoisomerism | |
Enzymology | 15713404 | Novel jadomycins: incorporation of non-natural and natural amino acids. | Jakeman DL, Farrell S, Young W, Doucet RJ, Timmons SC | Bioorg Med Chem Lett | 10.1016/j.bmcl.2004.12.082 | 2005 | Amino Acids/*chemical synthesis/chemistry, Isoquinolines/*chemical synthesis/chemistry/isolation & purification, Molecular Conformation, Spectrometry, Mass, Electrospray Ionization/methods, Streptomyces/*chemistry | Phylogeny |
Metabolism | 15817470 | Functional analyses of oxygenases in jadomycin biosynthesis and identification of JadH as a bifunctional oxygenase/dehydrase. | Chen YH, Wang CC, Greenwell L, Rix U, Hoffmeister D, Vining LC, Rohr J, Yang KQ | J Biol Chem | 10.1074/jbc.M414229200 | 2005 | Amino Acid Sequence, Blotting, Southern, Catalysis, Cell-Free System, Escherichia coli/metabolism, Genetic Techniques, Hydro-Lyases/chemistry/*physiology, Isoquinolines/chemistry/*metabolism, Models, Chemical, Models, Genetic, Molecular Sequence Data, Mutation, Oxygenases/chemistry/*physiology, Protein Binding, Protein Structure, Tertiary, Sequence Analysis, DNA, Species Specificity, Spectrophotometry, Streptomyces/metabolism, Streptomyces lividans/metabolism | Genetics |
Enzymology | 16185863 | Novel and expanded jadomycins incorporating non-proteogenic amino acids. | Jakeman DL, Graham CL, Reid TR | Bioorg Med Chem Lett | 10.1016/j.bmcl.2005.08.047 | 2005 | Amino Acids/*chemistry, Isoquinolines/*chemistry/isolation & purification, Molecular Structure, Oxazolone/chemistry, Spectrometry, Mass, Electrospray Ionization, Streptomyces/*metabolism | Phylogeny |
Metabolism | 16568271 | Culture conditions improving the production of jadomycin B. | Jakeman DL, Graham CL, Young W, Vining LC | J Ind Microbiol Biotechnol | 10.1007/s10295-006-0113-4 | 2006 | Anti-Bacterial Agents/chemistry/metabolism, Bacteriological Techniques/*methods, Biotechnology/*methods, Chondroitin Sulfate Proteoglycans/metabolism, Culture Media/chemistry, Ethanol, Glucose/chemistry/metabolism, Isoquinolines/chemistry/metabolism, Molecular Structure, Morpholines/chemistry/metabolism, Naphthoquinones/chemistry/metabolism, Receptor-Like Protein Tyrosine Phosphatases, Class 5, Streptomyces/classification/*metabolism | Biotechnology |
Phylogeny | 17021937 | Streptomyces gulbargensis sp. nov., isolated from soil in Karnataka, India. | Dastager SG, Li WJ, Agasar D, Sulochana MB, Tang SK, Tian XP, Zhi XY | Antonie Van Leeuwenhoek | 10.1007/s10482-006-9099-1 | 2007 | Alkalies/pharmacology, Anti-Bacterial Agents/pharmacology, Bacterial Typing Techniques, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Genes, rRNA, Hot Temperature, Hydrogen-Ion Concentration, India, Microscopy, Electron, Scanning, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, *Soil Microbiology, Streptomyces/*classification/genetics/*isolation & purification/ultrastructure, Temperature | Stress |
Biotechnology | 17653711 | Engineering a regulatory region of jadomycin gene cluster to improve jadomycin B production in Streptomyces venezuelae. | Zheng JT, Wang SL, Yang KQ | Appl Microbiol Biotechnol | 10.1007/s00253-007-1064-z | 2007 | Base Sequence, Blotting, Southern, DNA, Bacterial/chemistry/genetics, Genetic Engineering/*methods, Isoquinolines/metabolism, Molecular Sequence Data, *Multigene Family, Polymerase Chain Reaction, Promoter Regions, Genetic, Regulatory Sequences, Nucleic Acid/*genetics, Streptomyces/*genetics/*metabolism, Transformation, Genetic | Metabolism |
Pathogenicity | 19075054 | Antimicrobial activities of jadomycin B and structurally related analogues. | Jakeman DL, Bandi S, Graham CL, Reid TR, Wentzell JR, Douglas SE | Antimicrob Agents Chemother | 10.1128/AAC.00801-08 | 2008 | Anti-Bacterial Agents/chemistry/*pharmacology, Isoquinolines/chemistry/pharmacology, Methicillin-Resistant Staphylococcus aureus/drug effects, Microbial Sensitivity Tests, Molecular Structure, Staphylococcus epidermidis/drug effects, Streptomyces/*drug effects/genetics | |
Metabolism | 20112672 | [Evaluation of the activities of two promoters in Streptomycetes by reporter gene method]. | Li J, Xiang S, Yang X, Yang K | Wei Sheng Wu Xue Bao | 2009 | Bacterial Proteins/genetics/metabolism, Base Sequence, Drug Resistance, Bacterial, Gene Expression Regulation, Bacterial, *Genes, Reporter, Molecular Sequence Data, *Promoter Regions, Genetic, Streptomyces/*genetics/metabolism | Genetics | |
Phylogeny | 21287404 | A method to type the potential angucycline producers in actinomycetes isolated from marine sponges. | Ouyang Y, Wu H, Xie L, Wang G, Dai S, Chen M, Yang K, Li X | Antonie Van Leeuwenhoek | 10.1007/s10482-011-9554-5 | 2011 | Actinobacteria/*enzymology/genetics/isolation & purification, Animals, Anti-Bacterial Agents/*biosynthesis, Benz(a)Anthracenes/*metabolism, Drug Discovery, Macrolides, Phylogeny, Polyketide Synthases/biosynthesis, Polymerase Chain Reaction, Porifera/*microbiology, Sequence Analysis, DNA, Streptomyces/classification/enzymology/metabolism | Enzymology |
Metabolism | 22050382 | Jadomycins derived from the assimilation and incorporation of norvaline and norleucine. | Dupuis SN, Veinot T, Monro SM, Douglas SE, Syvitski RT, Goralski KB, McFarland SA, Jakeman DL | J Nat Prod | 10.1021/np200689w | 2011 | Amino Acid Sequence, Amino Acids/chemistry/metabolism, Chloramphenicol/metabolism, DNA/drug effects, Drug Screening Assays, Antitumor, Gram-Negative Bacteria/drug effects, Gram-Positive Bacteria/drug effects, Isoquinolines/chemistry/metabolism, Microbial Sensitivity Tests, Molecular Structure, Norleucine/chemistry/*metabolism, Oxazolone/chemistry, Streptomyces/*chemistry/metabolism, Valine/*analogs & derivatives/chemistry/metabolism | Pathogenicity |
Metabolism | 23650400 | The posttranslational modification cascade to the thiopeptide berninamycin generates linear forms and altered macrocyclic scaffolds. | Malcolmson SJ, Young TS, Ruby JG, Skewes-Cox P, Walsh CT | Proc Natl Acad Sci U S A | 10.1073/pnas.1307111110 | 2013 | Amino Acid Sequence, Bacterial Proteins/chemistry/genetics/*metabolism, Macrocyclic Compounds/chemistry/*metabolism, Molecular Sequence Data, Peptides/chemistry/genetics/*metabolism, Peptides, Cyclic/chemistry/genetics/metabolism, Protein Precursors/chemistry/genetics/*metabolism, Protein Processing, Post-Translational, Protein Structure, Secondary, Streptomyces lividans/chemistry/genetics/*metabolism, Thiazoles/chemistry/metabolism | Genetics |
Metabolism | 24231527 | Jadomycins are cytotoxic to ABCB1-, ABCC1-, and ABCG2-overexpressing MCF7 breast cancer cells. | Issa ME, Hall SR, Dupuis SN, Graham CL, Jakeman DL, Goralski KB | Anticancer Drugs | 10.1097/CAD.0000000000000043 | 2014 | ATP Binding Cassette Transporter, Subfamily B, ATP Binding Cassette Transporter, Subfamily B, Member 1/*metabolism, ATP Binding Cassette Transporter, Subfamily G, Member 2, ATP-Binding Cassette Transporters/*metabolism, Antibiotics, Antineoplastic/*pharmacology, Aurora Kinase B/antagonists & inhibitors, Breast Neoplasms, Cell Survival/drug effects, Drug Resistance, Multiple, Drug Resistance, Neoplasm, Drug Screening Assays, Antitumor, Female, Humans, MCF-7 Cells, Multidrug Resistance-Associated Proteins/*metabolism, Neoplasm Proteins/*metabolism, Polyketides/chemistry/*pharmacology | Pathogenicity |
Metabolism | 25267678 | New insights into chloramphenicol biosynthesis in Streptomyces venezuelae ATCC 10712. | Fernandez-Martinez LT, Borsetto C, Gomez-Escribano JP, Bibb MJ, Al-Bassam MM, Chandra G, Bibb MJ | Antimicrob Agents Chemother | 10.1128/AAC.04272-14 | 2014 | Acyl Carrier Protein/genetics/metabolism, Bacterial Proteins/*genetics/metabolism, Chloramphenicol/*biosynthesis, Gene Deletion, Gene Expression Profiling, *Gene Expression Regulation, Bacterial, Metabolic Networks and Pathways/*genetics, Microarray Analysis, Molecular Sequence Annotation, Multigene Family, Mutation, Sequence Analysis, DNA, Sodium-Hydrogen Exchangers/genetics/metabolism, Streptomyces/*genetics/metabolism, Transcription Factors/genetics/metabolism, Transcription, Genetic, Transferases (Other Substituted Phosphate Groups)/genetics/metabolism | Transcriptome |
Metabolism | 25554073 | Targeted activation of silent natural product biosynthesis pathways by reporter-guided mutant selection. | Guo F, Xiang S, Li L, Wang B, Rajasarkka J, Grondahl-Yli-Hannuksela K, Ai G, Metsa-Ketela M, Yang K | Metab Eng | 10.1016/j.ymben.2014.12.006 | 2014 | Anthraquinones/metabolism, *Genes, Bacterial, *Genes, Reporter, Isoquinolines/metabolism, *Multigene Family, *Mutation, *Streptomyces/genetics/metabolism | |
Pathogenicity | 25692677 | Eight-membered ring-containing jadomycins: implications for non-enzymatic natural products biosynthesis. | Robertson AW, Martinez-Farina CF, Smithen DA, Yin H, Monro S, Thompson A, McFarland SA, Syvitski RT, Jakeman DL | J Am Chem Soc | 10.1021/ja5114672 | 2015 | Acylation, Amino Acids, Neutral/chemistry, Antineoplastic Agents/chemistry/*pharmacology, Biological Products/chemical synthesis/*chemistry, Cell Line, Tumor/drug effects, Drug Screening Assays, Antitumor, Fermentation, Heterocyclic Compounds, 4 or More Rings/*chemistry/isolation & purification/metabolism, Humans, Magnetic Resonance Spectroscopy, Molecular Structure, Ornithine/chemistry, Streptomyces/growth & development/*metabolism, Structure-Activity Relationship, Tandem Mass Spectrometry | Metabolism |
Phylogeny | 26035093 | Isolation and Synthetic Diversification of Jadomycin 4-Amino-l-phenylalanine. | Martinez-Farina CF, Robertson AW, Yin H, Monro S, McFarland SA, Syvitski RT, Jakeman DL | J Nat Prod | 10.1021/np5009398 | 2015 | Isoquinolines/chemical synthesis/*chemistry, Molecular Structure, Naphthoquinones/chemical synthesis/*chemistry, Nuclear Magnetic Resonance, Biomolecular, Oxazolone/chemistry, Phenylalanine/*analogs & derivatives/chemical synthesis/chemistry, Streptomyces/*chemistry/growth & development | |
Enzymology | 26203536 | Characterization of l-Digitoxosyl-phenanthroviridin from Streptomyces venezuelae ISP5230. | Robertson AW, Martinez-Farina CF, Syvitski RT, Jakeman DL | J Nat Prod | 10.1021/acs.jnatprod.5b00277 | 2015 | Anti-Bacterial Agents/chemistry, Benzophenanthridines/chemistry/*isolation & purification, Drug Screening Assays, Antitumor, Humans, Isoquinolines/chemistry/*isolation & purification, Lysine/metabolism, Molecular Structure, National Cancer Institute (U.S.), Nuclear Magnetic Resonance, Biomolecular, Streptomyces/*chemistry, Structure-Activity Relationship, Tandem Mass Spectrometry, United States | Phylogeny |
26469060 | A method for investigating the stereochemical course of terpene cyclisations. | Rabe P, Rinkel J, Klapschinski TA, Barra L, Dickschat JS | Org Biomol Chem | 10.1039/c5ob01998b | 2016 | Cyclization, Molecular Conformation, Stereoisomerism, Terpenes/*chemistry | ||
Genetics | 26515616 | Genome-wide identification and evaluation of constitutive promoters in streptomycetes. | Li S, Wang J, Li X, Yin S, Wang W, Yang K | Microb Cell Fact | 10.1186/s12934-015-0351-0 | 2015 | Gene Expression Regulation, Bacterial/*genetics, Genome-Wide Association Study/*methods, Metabolic Engineering/*methods, Promoter Regions, Genetic/*genetics, Streptomyces/*genetics | |
Metabolism | 26715388 | Improvement of chloramphenicol production in Streptomyces venezuelae ATCC 10712 by overexpression of the aroB and aroK genes catalysing steps in the shikimate pathway. | Vitayakritsirikul V, Jaemsaeng R, Lohmaneeratana K, Thanapipatsiri A, Daduang R, Chuawong P, Thamchaipenet A | Antonie Van Leeuwenhoek | 10.1007/s10482-015-0640-y | 2015 | Catalysis, Chloramphenicol/*biosynthesis, *Gene Expression, Gene Expression Regulation, Enzymologic, Gene Expression Regulation, Fungal, Metabolic Networks and Pathways, Phosphotransferases (Alcohol Group Acceptor)/*genetics, Shikimic Acid/*metabolism, Streptomyces/*genetics/*metabolism, Transcription, Genetic | Biotechnology |
Metabolism | 26814718 | JadX is a Disparate Natural Product Binding Protein. | Robertson AW, Forget SM, Martinez-Farina CF, McCormick NE, Syvitski RT, Jakeman DL | J Am Chem Soc | 10.1021/jacs.5b11286 | 2016 | Biological Products/chemistry/*metabolism, Carrier Proteins/chemistry/genetics/*metabolism, Chloramphenicol/chemistry/metabolism, Isoquinolines/chemistry/metabolism, Molecular Conformation, Nuclear Magnetic Resonance, Biomolecular, Recombinant Proteins/chemistry/metabolism, Streptomyces/chemistry/*metabolism | |
Genetics | 26893416 | Genome Sequences of Streptomyces Phages Amela and Verse. | Layton SR, Hemenway RM, Munyoki CM, Barnes EB, Barnett SE, Bond AM, Narvaez JM, Sirisakd CD, Smith BR, Swain J, Syed O, Bowman CA, Russell DA, Bhuiyan S, Donegan-Quick R, Benjamin RC, Hughes LE | Genome Announc | 10.1128/genomeA.01589-15 | 2016 | ||
Metabolism | 27206520 | Activation of chloramphenicol biosynthesis in Streptomyces venezuelae ATCC 10712 by ethanol shock: insights from the promoter fusion studies. | Sekurova ON, Zhang J, Kristiansen KA, Zotchev SB | Microb Cell Fact | 10.1186/s12934-016-0484-9 | 2016 | Bacterial Proteins/genetics/metabolism, Chloramphenicol/*biosynthesis/chemistry, Ethanol/*pharmacology, Gene Expression Regulation, Bacterial/*drug effects, Genes, Reporter, Genotype, Multigene Family, Plasmids/genetics/metabolism, Promoter Regions, Genetic/*genetics, Repressor Proteins/genetics/metabolism, Streptomyces/genetics/growth & development/*metabolism | Genetics |
28377749 | Streptomyces venezuelae ISP5230 Maintains Excretion of Jadomycin upon Disruption of the MFS Transporter JadL Located within the Natural Product Biosynthetic Gene Cluster. | Forget SM, McVey J, Vining LC, Jakeman DL | Front Microbiol | 10.3389/fmicb.2017.00432 | 2017 | |||
Pathogenicity | 28520425 | Furan and Lactam Jadomycin Biosynthetic Congeners Isolated from Streptomyces venezuelae ISP5230 Cultured with Nepsilon-Trifluoroacetyl-l-lysine. | Forget SM, Robertson AW, Overy DP, Kerr RG, Jakeman DL | J Nat Prod | 10.1021/acs.jnatprod.7b00152 | 2017 | Amino Acid Sequence, Anti-Bacterial Agents/*chemistry, Cyclization, Furans/*chemistry, Gram-Positive Bacteria, Isoquinolines/*chemistry, Lactams/*chemistry, Lysine/*analogs & derivatives/chemistry/metabolism, Methicillin-Resistant Staphylococcus aureus/drug effects, Molecular Structure, Naphthoquinones/*chemistry, Pseudomonas aeruginosa/drug effects, Streptomyces/*chemistry | Phylogeny |
Metabolism | 28539332 | Identification and characterization of two types of amino acid-regulated acetyltransferases in actinobacteria. | Lu YX, Liu XX, Liu WB, Ye BC | Biosci Rep | 10.1042/BSR20170157 | 2017 | Acetyltransferases/genetics/*metabolism, Asparagine/genetics/*metabolism, Bacterial Proteins/genetics/*metabolism, Cysteine/genetics/*metabolism, Protein Processing, Post-Translational/*physiology, Streptomyces/*enzymology/genetics | Enzymology |
28553520 | Watasemycin biosynthesis in Streptomyces venezuelae: thiazoline C-methylation by a type B radical-SAM methylase homologue. | Inahashi Y, Zhou S, Bibb MJ, Song L, Al-Bassam MM, Bibb MJ, Challis GL | Chem Sci | 10.1039/c6sc03533g | 2017 | |||
29301868 | Protein acetylation: an important mechanism in actinobacteria. | Zhang H, Xu X | Biosci Rep | 10.1042/BSR20170851 | 2018 | Acetylation, *Actinobacteria, Amino Acid Sequence, Cysteine/genetics, Lysine, *Protein Processing, Post-Translational | ||
Metabolism | 30718781 | Modulation of salt tolerance in Thai jasmine rice (Oryza sativa L. cv. KDML105) by Streptomyces venezuelae ATCC 10712 expressing ACC deaminase. | Yoolong S, Kruasuwan W, Thanh Pham HT, Jaemsaeng R, Jantasuriyarat C, Thamchaipenet A | Sci Rep | 10.1038/s41598-018-37987-5 | 2019 | Bacterial Proteins/*biosynthesis, Carbon-Carbon Lyases/*biosynthesis, *Oryza/metabolism/microbiology, *Salt Tolerance, Streptomyces/*metabolism | |
Metabolism | 30721456 | Growth and differentiation properties of pikromycin-producing Streptomyces venezuelae ATCC15439. | Kim JE, Choi JS, Roe JH | J Microbiol | 10.1007/s12275-019-8539-3 | 2019 | Cell Wall/physiology, Chloramphenicol/biosynthesis, Gene Expression Profiling, Macrolides/*metabolism, Secondary Metabolism/physiology, Spores, Bacterial/*growth & development, Streptomyces/cytology/*growth & development/*metabolism, Transcriptome/genetics | Transcriptome |
Metabolism | 31429289 | On the Catalytic Activity of a GT1 Family Glycosyltransferase from Streptomyces venezuelae ISP5230. | Forget SM, Shepard SB, Soleimani E, Jakeman DL | J Org Chem | 10.1021/acs.joc.9b01130 | 2019 | Amino Acid Sequence, Biocatalysis, Glycosides/biosynthesis/chemistry, Glycosylation, Glycosyltransferases/chemistry/genetics/*metabolism, Molecular Structure, Polyphenols/chemistry/metabolism, Recombinant Proteins/chemistry/genetics/*metabolism, Streptomyces/*enzymology/genetics, Substrate Specificity | Enzymology |
Genetics | 32516997 | Comparative Genomics Determines Strain-Dependent Secondary Metabolite Production in Streptomyces venezuelae Strains. | Kim W, Lee N, Hwang S, Lee Y, Kim J, Cho S, Palsson B, Cho BK | Biomolecules | 10.3390/biom10060864 | 2020 | Chloramphenicol/*biosynthesis/chemistry/metabolism, *Genomics, Isoquinolines/chemistry/*metabolism, Molecular Structure, Streptomyces/chemistry/*classification/genetics/*metabolism | Metabolism |
Metabolism | 33400639 | Influence of core divisome proteins on cell division in Streptomyces venezuelae ATCC 10712. | Cantlay S, Sen BC, Flardh K, McCormick JR | Microbiology (Reading) | 10.1099/mic.0.001015 | 2021 | Bacterial Proteins/genetics/*metabolism, *Cell Division/genetics, Chromosome Segregation, Cytoskeletal Proteins/genetics/metabolism, Membrane Proteins/genetics/metabolism, Mutation, Phenotype, Promoter Regions, Genetic, Spores, Bacterial/cytology/genetics/physiology, Streptomyces/*cytology/genetics/physiology | Phenotype |
Genetics | 34100946 | Streptomyces venezuelae NRRL B-65442: genome sequence of a model strain used to study morphological differentiation in filamentous actinobacteria. | Gomez-Escribano JP, Holmes NA, Schlimpert S, Bibb MJ, Chandra G, Wilkinson B, Buttner MJ, Bibb MJ | J Ind Microbiol Biotechnol | 10.1093/jimb/kuab035 | 2021 | DNA, Bacterial/genetics, *Genome, Bacterial, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Streptomyces/cytology/genetics | Phylogeny |
Biotechnology | 34570109 | A High-Yield Streptomyces Transcription-Translation Toolkit for Synthetic Biology and Natural Product Applications. | Toh M, Chengan K, Hanson T, Freemont PS, Moore SJ | J Vis Exp | 10.3791/63012 | 2021 | *Biological Products, Plasmids, *Streptomyces/genetics, Synthetic Biology | |
Pathogenicity | 34708587 | Jadomycins: A potential chemotherapy for multi-drug resistant metastatic breast cancer. | Bonitto EP, McKeown BT, Goralski KB | Pharmacol Res Perspect | 10.1002/prp2.886 | 2021 | Animals, Antineoplastic Agents/*pharmacology, Breast Neoplasms/*drug therapy, Drug Resistance, Multiple, Drug Resistance, Neoplasm, Female, Humans, Isoquinolines/*pharmacology, Naphthoquinones/pharmacology, Streptomyces/metabolism | Metabolism |
Enzymology | 35985040 | Pilot study of jadomycin B pharmacokinetics and anti-tumoral effects in zebrafish larvae and mouse breast cancer xenograft models. | McKeown BT, Relja NJ, Hall SR, Gebremeskel S, MacLeod JM, Veinotte CJ, Bennett LG, Ohlund LB, Sleno L, Jakeman DL, Berman JN, Johnston B, Goralski KB | Can J Physiol Pharmacol | 10.1139/cjpp-2022-0152 | 2022 |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
9391 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40230) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-40230 | |||
18563 | Wink, J. | http://www.dsmz.de/microorganisms/wink_pdf/DSM40230.pdf | Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20216 | Curators of the HKI | http://www.leibniz-hki.de/de/ | Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
68368 | Automatically annotated from API 20E | |||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
85138 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID38564.1 | StrainInfo: A central database for resolving microbial strain identifiers |