Strain identifier
BacDive ID: 160595
Type strain:
Species: Anoxybacillus sp.
Strain Designation: DT3-1
Strain history: <- K. M. Goh, UTM, Fac, of Bioscs. and Med. Eng., Skudai, Johor, Malaysia; DT3-1 <- I. M. Haris and K. M. Goh
NCBI tax ID(s): 1872573 (species)
General
@ref: 67503
BacDive-ID: 160595
DSM-Number: 28778
keywords: genome sequence, 16S sequence, Bacteria, spore-forming
description: Anoxybacillus sp. DT3-1 is a spore-forming bacterium that was isolated from water sample.
NCBI tax id
- NCBI tax id: 1872573
- Matching level: species
strain history
- @ref: 67503
- history: <- K. M. Goh, UTM, Fac, of Bioscs. and Med. Eng., Skudai, Johor, Malaysia; DT3-1 <- I. M. Haris and K. M. Goh
doi: 10.13145/bacdive160595.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Bacillaceae
- genus: Anoxybacillus
- species: Anoxybacillus sp.
- full scientific name: Anoxybacillus Pikuta et al. 2000
@ref: 67503
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Caryophanales
family: Bacillaceae
genus: Anoxybacillus
species: Anoxybacillus sp.
full scientific name: Anoxybacillus sp.
strain designation: DT3-1
type strain: no
Culture and growth conditions
culture medium
- @ref: 67503
- name: CASO AGAR (MERCK 105458) (DSMZ Medium 220)
- growth: yes
- link: https://mediadive.dsmz.de/medium/220
- composition: Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
culture temp
- @ref: 67503
- growth: positive
- type: growth
- temperature: 55
Isolation, sampling and environmental information
isolation
- @ref: 67503
- sample type: water sample
- geographic location: Selangor, Tua hot spring
- country: Malaysia
- origin.country: MYS
- continent: Asia
- latitude: 3.1371
- longitude: 101.835
taxonmaps
- @ref: 69479
- File name: preview.99_3885.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_79;96_465;97_1979;98_2434;99_3885&stattab=map
- Last taxonomy: Anoxybacillus
- 16S sequence: GU129931
- Sequence Identity:
- Total samples: 2028
- soil counts: 183
- aquatic counts: 335
- animal counts: 1423
- plant counts: 87
Sequence information
16S sequences
- @ref: 67503
- description: Anoxybacillus sp. DT3-1 16S ribosomal RNA gene, partial sequence
- accession: GU129931
- length: 1518
- database: nuccore
- NCBI tax ID: 198467
Genome sequences
- @ref: 66792
- description: Anoxybacillus sp. DT3-1
- accession: 690871.3
- assembly level: wgs
- database: patric
- NCBI tax ID: 198467
Genome-based predictions
predictions
@ref | trait | model | description | prediction | confidence | training_data |
---|---|---|---|---|---|---|
69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 79.002 | no |
69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 79.158 | no |
69480 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 84.71 | no |
69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 51.636 | no |
69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | yes | 68.034 | yes |
69480 | flagellated | motile2+ | Ability to perform flagellated movement | yes | 77.824 | no |
External links
@ref: 67503
culture collection no.: DSM 28778
straininfo link
- @ref: 112834
- straininfo: 405419
literature
Pubmed-ID | title | authors | journal | DOI | year | topic | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
27555880 | Characterization of a glucose-tolerant beta-glucosidase from Anoxybacillus sp. DT3-1. | Chan CS, Sin LL, Chan KG, Shamsir MS, Manan FA, Sani RK, Goh KM | Biotechnol Biofuels | 10.1186/s13068-016-0587-x | 2016 | |||
29723622 | Purification and characterization of a novel GH1 beta-glucosidase from Jeotgalibacillus malaysiensis. | Liew KJ, Lim L, Woo HY, Chan KG, Shamsir MS, Goh KM | Int J Biol Macromol | 10.1016/j.ijbiomac.2018.04.156 | 2018 | Enzymology | Biotechnology, Cellobiose/metabolism, Cloning, Molecular, Computational Biology, Kinetics, Molecular Weight, Planococcaceae/*enzymology, Substrate Specificity, beta-Glucosidase/chemistry/genetics/*isolation & purification/*metabolism | Biotechnology |
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
67503 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-28778 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 28778) | |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
112834 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID405419.1 |