Strain identifier

BacDive ID: 160595

Type strain: No

Species: Anoxybacillus sp.

Strain Designation: DT3-1

Strain history: <- K. M. Goh, UTM, Fac, of Bioscs. and Med. Eng., Skudai, Johor, Malaysia; DT3-1 <- I. M. Haris and K. M. Goh

NCBI tax ID(s): 1872573 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 67503

BacDive-ID: 160595

DSM-Number: 28778

keywords: genome sequence, 16S sequence, Bacteria, spore-forming

description: Anoxybacillus sp. DT3-1 is a spore-forming bacterium that was isolated from water sample.

NCBI tax id

  • NCBI tax id: 1872573
  • Matching level: species

strain history

  • @ref: 67503
  • history: <- K. M. Goh, UTM, Fac, of Bioscs. and Med. Eng., Skudai, Johor, Malaysia; DT3-1 <- I. M. Haris and K. M. Goh

doi: 10.13145/bacdive160595.20240916.9.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Bacillaceae
  • genus: Anoxybacillus
  • species: Anoxybacillus sp.
  • full scientific name: Anoxybacillus Pikuta et al. 2000

@ref: 67503

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Caryophanales

family: Bacillaceae

genus: Anoxybacillus

species: Anoxybacillus sp.

full scientific name: Anoxybacillus sp.

strain designation: DT3-1

type strain: no

Culture and growth conditions

culture medium

  • @ref: 67503
  • name: CASO AGAR (MERCK 105458) (DSMZ Medium 220)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/220
  • composition: Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water

culture temp

  • @ref: 67503
  • growth: positive
  • type: growth
  • temperature: 55

Isolation, sampling and environmental information

isolation

  • @ref: 67503
  • sample type: water sample
  • geographic location: Selangor, Tua hot spring
  • country: Malaysia
  • origin.country: MYS
  • continent: Asia
  • latitude: 3.1371
  • longitude: 101.835

taxonmaps

  • @ref: 69479
  • File name: preview.99_3885.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_79;96_465;97_1979;98_2434;99_3885&stattab=map
  • Last taxonomy: Anoxybacillus
  • 16S sequence: GU129931
  • Sequence Identity:
  • Total samples: 2028
  • soil counts: 183
  • aquatic counts: 335
  • animal counts: 1423
  • plant counts: 87

Sequence information

16S sequences

  • @ref: 67503
  • description: Anoxybacillus sp. DT3-1 16S ribosomal RNA gene, partial sequence
  • accession: GU129931
  • length: 1518
  • database: nuccore
  • NCBI tax ID: 198467

Genome sequences

  • @ref: 66792
  • description: Anoxybacillus sp. DT3-1
  • accession: 690871.3
  • assembly level: wgs
  • database: patric
  • NCBI tax ID: 198467

Genome-based predictions

predictions

@reftraitmodeldescriptionpredictionconfidencetraining_data
69480gram-positivegram-positivePositive reaction to Gram-stainingyes79.002no
69480anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no79.158no
69480spore-formingspore-formingAbility to form endo- or exosporesyes84.71no
69480aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)no51.636no
69480thermophilicthermophileAbility to grow at temperatures above or equal to 45°Cyes68.034yes
69480flagellatedmotile2+Ability to perform flagellated movementyes77.824no

External links

@ref: 67503

culture collection no.: DSM 28778

straininfo link

  • @ref: 112834
  • straininfo: 405419

literature

Pubmed-IDtitleauthorsjournalDOIyeartopicmeshtopic2
27555880Characterization of a glucose-tolerant beta-glucosidase from Anoxybacillus sp. DT3-1.Chan CS, Sin LL, Chan KG, Shamsir MS, Manan FA, Sani RK, Goh KMBiotechnol Biofuels10.1186/s13068-016-0587-x2016
29723622Purification and characterization of a novel GH1 beta-glucosidase from Jeotgalibacillus malaysiensis.Liew KJ, Lim L, Woo HY, Chan KG, Shamsir MS, Goh KMInt J Biol Macromol10.1016/j.ijbiomac.2018.04.1562018EnzymologyBiotechnology, Cellobiose/metabolism, Cloning, Molecular, Computational Biology, Kinetics, Molecular Weight, Planococcaceae/*enzymology, Substrate Specificity, beta-Glucosidase/chemistry/genetics/*isolation & purification/*metabolismBiotechnology

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67503Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-28778Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 28778)
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
112834Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID405419.1