Strain identifier

BacDive ID: 160341

Type strain: No

Species: Lactobacillus johnsonii

Strain Designation: Cla-CZ-4

Strain history: <- T. Clavel, RWTH Aachen; Cla-CZ-4 <- C. Zenner, LMU, München;

NCBI tax ID(s): 33959 (species)

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General

@ref: 67247

BacDive-ID: 160341

DSM-Number: 108981

keywords: 16S sequence, Bacteria, mesophilic, human pathogen

description: Lactobacillus johnsonii Cla-CZ-4 is a mesophilic human pathogen that was isolated from chicken cecal content, adult.

NCBI tax id

  • NCBI tax id: 33959
  • Matching level: species

strain history

  • @ref: 67247
  • history: <- T. Clavel, RWTH Aachen; Cla-CZ-4 <- C. Zenner, LMU, München;

doi: 10.13145/bacdive160341.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Lactobacillaceae
  • genus: Lactobacillus
  • species: Lactobacillus johnsonii
  • full scientific name: Lactobacillus johnsonii Fujisawa et al. 1992

@ref: 67247

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Lactobacillaceae

genus: Lactobacillus

species: Lactobacillus johnsonii

full scientific name: Lactobacillus johnsonii Fujisawa et al. 1992

strain designation: Cla-CZ-4

type strain: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
67247BIFIDOBACTERIUM MEDIUM (DSMZ Medium 58)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium58.pdf
67247WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339)yeshttps://mediadive.dsmz.de/medium/339Name: WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339) Composition: dehydrated Wilkins-Chalgren medium 33.0 g/l L-Cysteine HCl 0.3 g/l Sodium resazurin 0.0005 g/l Distilled water

culture temp

  • @ref: 67247
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6838016199urea-hydrolysis
6838029016arginine-hydrolysis
6838029985L-glutamate+degradation
6838017632nitrate-reduction
6838027897tryptophan-energy source

metabolite production

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68380serine arylamidase+
68380glutamyl-glutamate arylamidase-
68380histidine arylamidase+
68380glycin arylamidase+
68380alanine arylamidase+3.4.11.2
68380tyrosine arylamidase+
68380pyrrolidonyl arylamidase-3.4.19.3
68380leucine arylamidase+3.4.11.1
68380phenylalanine arylamidase+
68380leucyl glycin arylamidase+3.4.11.1
68380L-arginine arylamidase+
68380alkaline phosphatase-3.1.3.1
68380tryptophan deaminase-4.1.99.1
68380alpha-fucosidase-3.2.1.51
68380glutamate decarboxylase+4.1.1.15
68380beta-glucuronidase-3.2.1.31
68380alpha-arabinosidase-3.2.1.55
68380beta-glucosidase+3.2.1.21
68380alpha-glucosidase+3.2.1.20
68380beta-Galactosidase 6-phosphate-
68380beta-galactosidase-3.2.1.23
68380alpha-galactosidase+3.2.1.22
68380arginine dihydrolase-3.5.3.6
68380urease-3.5.1.5

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
67247--+--++--+/-+/-+/-+----++/-+++-++++-+

Isolation, sampling and environmental information

isolation

  • @ref: 67247
  • sample type: chicken cecal content, adult
  • geographic location: Munich
  • country: Germany
  • origin.country: DEU
  • continent: Europe
  • latitude: 48.1502
  • longitude: 11.5856

Safety information

risk assessment

  • @ref: 67247
  • pathogenicity human: yes, in single cases
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 67247
  • description: Lactobacillus johnsonii strain ClaCZ4 16S ribosomal RNA gene, partial sequence
  • accession: MN055929.1
  • length: 1511
  • database: ena
  • NCBI tax ID: 33959

External links

@ref: 67247

culture collection no.: DSM 108981

straininfo link

  • @ref: 112594
  • straininfo: 403812

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
67247Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-108981Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 108981)
68380Automatically annotated from API rID32A
112594Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID403812.1