Strain identifier
BacDive ID: 160340
Type strain:
Species: Brevibacillus thermoruber
Strain Designation: PM1
Strain history: <- G. King, Louisiana State Univ., Baton Rouge, USA; PM1 <- C. King
NCBI tax ID(s): 33942 (species)
General
@ref: 67246
BacDive-ID: 160340
DSM-Number: 26550
keywords: genome sequence, Bacteria, spore-forming
description: Brevibacillus thermoruber PM1 is a spore-forming bacterium that was isolated from microbial mat.
NCBI tax id
- NCBI tax id: 33942
- Matching level: species
strain history
- @ref: 67246
- history: <- G. King, Louisiana State Univ., Baton Rouge, USA; PM1 <- C. King
doi: 10.13145/bacdive160340.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Paenibacillaceae
- genus: Brevibacillus
- species: Brevibacillus thermoruber
- full scientific name: Brevibacillus thermoruber (Manachini et al. 1985 ex Guicciardi et al. 1968) Shida et al. 1996
synonyms
- @ref: 20215
- synonym: Bacillus thermoruber
@ref: 67246
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Caryophanales
family: Paenibacillaceae
genus: Brevibacillus
species: Brevibacillus thermoruber
full scientific name: Brevibacillus thermoruber (Manachini et al. 1985) Shida et al. 1996
strain designation: PM1
type strain: no
Culture and growth conditions
culture medium
- @ref: 67246
- name: GYE - MEDIUM (DSMZ Medium 572)
- growth: yes
- link: https://mediadive.dsmz.de/medium/572
- composition: Name: GYE - MEDIUM (DSMZ Medium 572) Composition: Glucose 15.0 g/l Yeast extract 5.0 g/l CaCl2 x 2 H2O 0.2 g/l Tap water
culture temp
- @ref: 67246
- growth: positive
- type: growth
- temperature: 55
Isolation, sampling and environmental information
isolation
- @ref: 67246
- sample type: microbial mat
- geographic location: Hawaii Noational Volcanoes Park, Puhimau geothermal area
- country: USA
- origin.country: USA
- continent: North America
Safety information
risk assessment
- @ref: 67246
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Brevibacillus thermoruber PM1 | GCA_000744635 | contig | ncbi | 1382302 |
66792 | Brevibacillus thermoruber PM1 | 1382302.3 | wgs | patric | 1382302 |
66792 | Brevibacillus thermoruber PM1 | 2571042366 | draft | img | 1382302 |
Genome-based predictions
predictions
@ref | trait | model | description | prediction | confidence | training_data |
---|---|---|---|---|---|---|
69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 62.621 | no |
69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 95.348 | no |
69480 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 89.469 | no |
69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 68.753 | no |
69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 83.637 | no |
69480 | flagellated | motile2+ | Ability to perform flagellated movement | yes | 81.383 | no |
External links
@ref: 67246
culture collection no.: DSM 26550
straininfo link
- @ref: 112593
- straininfo: 397185
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
67246 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-26550 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 26550) | |
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
112593 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID397185.1 |