Strain identifier

BacDive ID: 160340

Type strain: No

Species: Brevibacillus thermoruber

Strain Designation: PM1

Strain history: <- G. King, Louisiana State Univ., Baton Rouge, USA; PM1 <- C. King

NCBI tax ID(s): 33942 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 67246

BacDive-ID: 160340

DSM-Number: 26550

keywords: genome sequence, Bacteria, spore-forming

description: Brevibacillus thermoruber PM1 is a spore-forming bacterium that was isolated from microbial mat.

NCBI tax id

  • NCBI tax id: 33942
  • Matching level: species

strain history

  • @ref: 67246
  • history: <- G. King, Louisiana State Univ., Baton Rouge, USA; PM1 <- C. King

doi: 10.13145/bacdive160340.20240916.9.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Paenibacillaceae
  • genus: Brevibacillus
  • species: Brevibacillus thermoruber
  • full scientific name: Brevibacillus thermoruber (Manachini et al. 1985 ex Guicciardi et al. 1968) Shida et al. 1996
  • synonyms

    • @ref: 20215
    • synonym: Bacillus thermoruber

@ref: 67246

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Caryophanales

family: Paenibacillaceae

genus: Brevibacillus

species: Brevibacillus thermoruber

full scientific name: Brevibacillus thermoruber (Manachini et al. 1985) Shida et al. 1996

strain designation: PM1

type strain: no

Culture and growth conditions

culture medium

  • @ref: 67246
  • name: GYE - MEDIUM (DSMZ Medium 572)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/572
  • composition: Name: GYE - MEDIUM (DSMZ Medium 572) Composition: Glucose 15.0 g/l Yeast extract 5.0 g/l CaCl2 x 2 H2O 0.2 g/l Tap water

culture temp

  • @ref: 67246
  • growth: positive
  • type: growth
  • temperature: 55

Isolation, sampling and environmental information

isolation

  • @ref: 67246
  • sample type: microbial mat
  • geographic location: Hawaii Noational Volcanoes Park, Puhimau geothermal area
  • country: USA
  • origin.country: USA
  • continent: North America

Safety information

risk assessment

  • @ref: 67246
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Brevibacillus thermoruber PM1GCA_000744635contigncbi1382302
66792Brevibacillus thermoruber PM11382302.3wgspatric1382302
66792Brevibacillus thermoruber PM12571042366draftimg1382302

Genome-based predictions

predictions

@reftraitmodeldescriptionpredictionconfidencetraining_data
69480gram-positivegram-positivePositive reaction to Gram-stainingyes62.621no
69480anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no95.348no
69480spore-formingspore-formingAbility to form endo- or exosporesyes89.469no
69480aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)yes68.753no
69480thermophilicthermophileAbility to grow at temperatures above or equal to 45°Cno83.637no
69480flagellatedmotile2+Ability to perform flagellated movementyes81.383no

External links

@ref: 67246

culture collection no.: DSM 26550

straininfo link

  • @ref: 112593
  • straininfo: 397185

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67246Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-26550Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 26550)
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
112593Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID397185.1