Strain identifier
BacDive ID: 160340
Type strain: 
Species: Brevibacillus thermoruber
Strain Designation: PM1
Strain history: <- G. King, Louisiana State Univ., Baton Rouge, USA; PM1 <- C. King
NCBI tax ID(s): 33942 (species)
General
@ref: 67246
BacDive-ID: 160340
DSM-Number: 26550
keywords: genome sequence, Bacteria, thermophilic
description: Brevibacillus thermoruber PM1 is a thermophilic bacterium that was isolated from microbial mat.
NCBI tax id
- NCBI tax id: 33942
- Matching level: species
strain history
- @ref: 67246
- history: <- G. King, Louisiana State Univ., Baton Rouge, USA; PM1 <- C. King
doi: 10.13145/bacdive160340.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Paenibacillaceae
- genus: Brevibacillus
- species: Brevibacillus thermoruber
- full scientific name: Brevibacillus thermoruber (Manachini et al. 1985 ex Guicciardi et al. 1968) Shida et al. 1996
synonyms
- @ref: 20215
- synonym: Bacillus thermoruber
@ref: 67246
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Caryophanales
family: Paenibacillaceae
genus: Brevibacillus
species: Brevibacillus thermoruber
full scientific name: Brevibacillus thermoruber (Manachini et al. 1985) Shida et al. 1996
strain designation: PM1
type strain: no
Culture and growth conditions
culture medium
- @ref: 67246
- name: GYE - MEDIUM (DSMZ Medium 572)
- growth: yes
- link: https://mediadive.dsmz.de/medium/572
- composition: Name: GYE - MEDIUM (DSMZ Medium 572) Composition: Glucose 15.0 g/l Yeast extract 5.0 g/l CaCl2 x 2 H2O 0.2 g/l Tap water
culture temp
- @ref: 67246
- growth: positive
- type: growth
- temperature: 55
- range: thermophilic
Isolation, sampling and environmental information
isolation
- @ref: 67246
- sample type: microbial mat
- geographic location: Hawaii Noational Volcanoes Park, Puhimau geothermal area
- country: USA
- origin.country: USA
- continent: North America
Safety information
risk assessment
- @ref: 67246
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Brevibacillus thermoruber PM1 | GCA_000744635 | contig | ncbi | 1382302 |
| 66792 | Brevibacillus thermoruber PM1 | 1382302.3 | wgs | patric | 1382302 |
| 66792 | Brevibacillus thermoruber PM1 | 2571042366 | draft | img | 1382302 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | yes | 88.631 | no |
| gram-positive | yes | 76.909 | no |
| anaerobic | no | 97.751 | no |
| halophile | no | 90.218 | no |
| spore-forming | yes | 95.523 | no |
| glucose-util | yes | 91.667 | no |
| aerobic | yes | 86.214 | no |
| flagellated | yes | 64.635 | no |
| glucose-ferment | no | 91.839 | no |
| thermophile | yes | 73.338 | yes |
External links
@ref: 67246
culture collection no.: DSM 26550
straininfo link
- @ref: 112593
- straininfo: 397185
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 67246 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-26550 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 26550) | |
| 112593 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID397185.1 |