Strain identifier

BacDive ID: 16034

Type strain: Yes

Species: Streptomyces tanashiensis

Strain Designation: KITA 144

Strain history: KCC S-0086 <-- T. Yamaguchi (IAM 0017) <-- T. Hata 144.

NCBI tax ID(s): 67367 (species)

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General

@ref: 9256

BacDive-ID: 16034

DSM-Number: 40195

keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic, antibiotic compound production

description: Streptomyces tanashiensis KITA 144 is a spore-forming, mesophilic bacterium that produces antibiotic compounds and was isolated from soil.

NCBI tax id

  • NCBI tax id: 67367
  • Matching level: species

strain history

@refhistory
9256<- E.B. Shirling, ISP <- Y. Yagisawa <- T. Hata, KITA, 144
67770KCC S-0086 <-- T. Yamaguchi (IAM 0017) <-- T. Hata 144.

doi: 10.13145/bacdive16034.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces tanashiensis
  • full scientific name: Streptomyces tanashiensis Hata et al. 1952 (Approved Lists 1980)

@ref: 9256

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces tanashiensis

full scientific name: Streptomyces tanashiensis Hata et al. 1952

strain designation: KITA 144

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480no91.434
69480100positive

Culture and growth conditions

culture medium

  • @ref: 9256
  • name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/65
  • composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
9256positivegrowth28mesophilic
18556positiveoptimum26mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

tolerance

  • @ref: 18556
  • compound: Lysozyme
  • percentage: 0.5

spore formation

@refspore formationconfidence
69481yes100
69480yes100

compound production

@refcompound
9256luteomycin
20216Luteomycin
67770Luteomycin

halophily

  • @ref: 18556
  • salt: NaCl
  • growth: positive
  • tested relation: maximum
  • concentration: 5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
1855617234glucose+
1855622599arabinose+/-
1855617992sucrose-
1855618222xylose+
1855617268myo-inositol-
1855629864mannitol-
1855628757fructose-
1855626546rhamnose-
1855616634raffinose-
1855662968cellulose-
683685291gelatin+hydrolysis
6836827897tryptophan-energy source
6836816199urea+hydrolysis
6836816947citrate-assimilation
6836818257ornithine+degradation
6836825094lysine+degradation
6836829016arginine+hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6836815688acetoinyes
6836835581indoleno
6836816136hydrogen sulfideyes

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin+
6836835581indole-

enzymes

@refvalueactivityec
68368gelatinase+
68368tryptophan deaminase+4.1.99.1
68368urease+3.5.1.5
68368ornithine decarboxylase+4.1.1.17
68368lysine decarboxylase+4.1.1.18
68368arginine dihydrolase+3.5.3.6
68368beta-galactosidase+3.2.1.23

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGEL
18556++++-+++-++

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentgeographic location
9256soilJapanJPNAsia
67770Cultivated soilJapanJPNAsiaTanashi, Tokyo

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_135.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_102;97_109;98_120;99_135&stattab=map
  • Last taxonomy: Streptomyces
  • 16S sequence: AB184245
  • Sequence Identity:
  • Total samples: 4030
  • soil counts: 2441
  • aquatic counts: 286
  • animal counts: 1009
  • plant counts: 294

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
92561Risk group (German classification)
185561German classification

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptomyces tanashiensis strain IFO 12919 16S ribosomal RNA gene, partial sequenceAY9998561419ena67367
20218Streptomyces tanashiensis gene for 16S ribosomal RNA, partial sequence, strain: JCM 4671D44299120ena67367
20218Streptomyces tanashiensis 16S rRNA gene, type strain LMG 20274AJ7813621478ena67367
20218Streptomyces tanashiensis gene for 16S rRNA, partial sequence, strain: NBRC 12919AB1842451481ena67367

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptomyces tanashiensis JCM 4086GCA_014648895scaffoldncbi67367
66792Streptomyces tanashiensis strain JCM 408667367.3wgspatric67367

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
flagellatedno97.07no
gram-positiveyes86.65no
anaerobicno99.356no
aerobicyes92.443no
halophileno95.315no
spore-formingyes93.886no
thermophileno99.265no
glucose-utilyes89.597yes
motileno94.45no
glucose-fermentno88.272no

External links

@ref: 9256

culture collection no.: DSM 40195, ATCC 23967, CBS 165.54, CBS 950.68, IFO 12919, ISP 5195, JCM 4086, JCM 4671, NBRC 12919, NRRL B-1692, RIA 1148, BCRC 12641, CBS 165.64, CGMCC 4.1924, HUT 6070, IMET 42939, KCTC 19972, NRRL B-1920, VKM Ac-1892

straininfo link

  • @ref: 85107
  • straininfo: 38303

literature

  • topic: Phylogeny
  • Pubmed-ID: 35258449
  • title: Characterization of Streptomyces nymphaeiformis sp. nov., and its taxonomic relatedness to other polyhydroxybutyrate-degrading streptomycetes.
  • authors: Hix GR, Khan MS, Miller MT, Napier EC, O'Brien AL, White RP, Baron SF
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.005266
  • year: 2022
  • mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, *Fatty Acids/chemistry, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Streptomyces/genetics
  • topic2: Transcriptome

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9256Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40195)https://www.dsmz.de/collection/catalogue/details/culture/DSM-40195
18556Wink, J.http://www.dsmz.de/microorganisms/wink_pdf/DSM40195.pdfCompendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20216Curators of the HKIhttp://www.leibniz-hki.de/de/Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI)
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68368Automatically annotated from API 20E
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
85107Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID38303.1StrainInfo: A central database for resolving microbial strain identifiers