Name: Streptomyces tanashiensis KITA 144
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 16034

Type strain:

Species: Streptomyces tanashiensis

Strain Designation: KITA 144

Culture col. no.: DSM 40195, ATCC 23967, CBS 165.54, CBS 950.68, IFO 12919, ISP 5195, JCM 4086, JCM 4671, NBRC 12919, NRRL B-1692, RIA 1148, BCRC 12641, CBS 165.64, CGMCC 4.1924, HUT 6070, IMET 42939, KCTC 19972, NRRL B-1920, VKM Ac-1892

Strain history: KCC S-0086 <-- T. Yamaguchi (IAM 0017) <-- T. Hata 144.

NCBI tax ID(s): 67367 (species)

SI-ID 38303

ATCC 23967, IFO 12919, DSM 40195, JCM 4086, JCM 4671, CCRC 12641, HUT 6070, IMET 42939, VKM Ac-1892, CBS 950.68, CBS 165.64, CBS 165.54, NBRC 12919, LMG 20274, BCRC 12641, KCTC 19972, NRRL B-1920, NRRL B-1692, CGMCC 4.1924, AS 4.1924

Special Collections

Other strains from Streptomyces tanashiensis

Section

Streptomyces tanashiensis KITA 144 is a spore-forming bacterium that produces antibiotic compounds and was isolated from soil.

antibiotic compound production
spore-forming
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces tanashiensis**
	Full Scientific Name (LPSN)	Streptomyces tanashiensis Hata et al. 1952 (Approved Lists 1980)

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %90.171

[Ref.: #69480]	Motility	no Confidence in %90

Information on culture and growth conditions Culture and growth conditions

[Ref.: #9256]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #9256]

Culture medium growth

[Ref.: #9256]

Culture medium link

Medium recipe at MediaDive

[Ref.: #9256]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #9256]	growth	28 °C
[Ref.: #18556]	optimum	26 °C
[Ref.: #67770]	growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Oxygen tolerance

aerobe Confidence in %90.778

[Ref.: #69480]	Ability of spore formation	yes Confidence in %92.134
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100

[Ref.: #9256]	Name of produced compound	luteomycin
[Ref.: #20216]	Name of produced compound	Luteomycin
[Ref.: #67770]	Name of produced compound	Luteomycin

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #18556]		NaCl		maximum	5	%

[Ref.: #18556]	Name of tolerated compound	Lysozyme
[Ref.: #18556]	Tolerance percentage	0.5

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #18556]	arabinose ChEBI	+/-
[Ref.: #68368]	arginine ChEBI	+	hydrolysis	* from API 20E
[Ref.: #18556]	cellulose ChEBI	-
[Ref.: #68368]	citrate ChEBI	-	assimilation	* from API 20E
[Ref.: #18556]	fructose ChEBI	-
[Ref.: #68368]	gelatin ChEBI	+	hydrolysis	* from API 20E
[Ref.: #18556]	glucose ChEBI	+
[Ref.: #68368]	lysine ChEBI	+	degradation	* from API 20E
[Ref.: #18556]	mannitol ChEBI	-
[Ref.: #18556]	myo-inositol ChEBI	-
[Ref.: #68368]	ornithine ChEBI	+	degradation	* from API 20E
[Ref.: #18556]	raffinose ChEBI	-
[Ref.: #18556]	rhamnose ChEBI	-
[Ref.: #18556]	sucrose ChEBI	-
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	+	hydrolysis	* from API 20E
[Ref.: #18556]	xylose ChEBI	+
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #68368]	acetoin ChEBI	yes	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	yes	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	+		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68368]	arginine dihydrolase	+	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	+	3.2.1.23	* from API 20E
[Ref.: #68368]	gelatinase	+		* from API 20E
[Ref.: #68368]	lysine decarboxylase	+	4.1.1.18	* from API 20E
[Ref.: #68368]	ornithine decarboxylase	+	4.1.1.17	* from API 20E
[Ref.: #68368]	tryptophan deaminase	+	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	+	3.5.1.5	* from API 20E

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #18556]	116	+	+	+	+	-	+	+	+	-	+	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9256]	Sample type/isolated from	soil
[Ref.: #9256]	Country	Japan
[Ref.: #9256]	Country ISO 3 Code	JPN
[Ref.: #9256]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Cultivated soil
[Ref.: #67770]	Geographic location (country and/or sea, region)	Tanashi, Tokyo
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB184245 (>99% sequence identity) for Streptomyces from Microbeatlas

Aquatic Samples	286
Soil Samples	2441
Animal Samples	1009
Plant Samples	294
Total Samples	4030

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18556]	Biosafety level	1	German classification
[Ref.: #9256]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces tanashiensis strain IFO 12919 16S ribosomal RNA gene, partial sequence	AY999856	1419	GenBank ENA	67367 tax ID	*
[Ref.: #20218]	Streptomyces tanashiensis gene for 16S ribosomal RNA, partial sequence, strain: JCM 4671	D44299	120	GenBank ENA	67367 tax ID	*
[Ref.: #20218]	Streptomyces tanashiensis 16S rRNA gene, type strain LMG 20274	AJ781362	1478	GenBank ENA	67367 tax ID	*
[Ref.: #20218]	Streptomyces tanashiensis gene for 16S rRNA, partial sequence, strain: NBRC 12919	AB184245	1481	GenBank ENA	67367 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Streptomyces tanashiensis JCM 4086	GCA_014648895	scaffold	GenBank ENA	67367 tax ID	*
[Ref.: #66792]	Streptomyces tanashiensis strain JCM 4086	67367.3	wgs	PATRIC	67367 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces tanashiensis JCM 4086 NCBI: GCA_014648895.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces tanashiensis JCM 4086 NCBI: GCA_014648895.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	90.171	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	97.348	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	90.778	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	92.134	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	97.5	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	90	no

Availability in culture collections External links

[Ref.: #9256]

Culture collection no.

DSM 40195, ATCC 23967, CBS 165.54, CBS 950.68, IFO 12919, ISP 5195, JCM 4086, JCM 4671, NBRC 12919, NRRL B-1692, RIA 1148, BCRC 12641, CBS 165.64, CGMCC 4.1924, HUT 6070, IMET 42939, KCTC 19972, NRRL B-1920, VKM Ac-1892

[Ref.: #85107]

SI-ID 38303

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Characterization of Streptomyces nymphaeiformis sp. nov., and its taxonomic relatedness to other polyhydroxybutyrate-degrading streptomycetes.	Hix GR, Khan MS, Miller MT, Napier EC, O'Brien AL, White RP, Baron SF	Int J Syst Evol Microbiol	10.1099/ijsem.0.005266	2022	*

References

#9256

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40195

#18556

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20216

Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) Curators of the HKI: Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#85107

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID38303.1 )

* These data were automatically processed and therefore are not curated

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Streptomyces tanashiensis JCM 4086

Streptomyces tanashiensis JCM 4086

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