Strain identifier
BacDive ID: 159906
Type strain: 
Species: Tidjanibacter massiliensis
Strain history: <- F. Cadoret, CHU Hopital de la Timone, Marseille Cedex 05, France; Marseille-P3084
NCBI tax ID(s): 1871003 (species)
version 8.1 (current version)
General
@ref: 66810
BacDive-ID: 159906
DSM-Number: 103552
keywords: genome sequence, Bacteria, anaerobe, mesophilic
description: Tidjanibacter massiliensis DSM 103552 is an anaerobe, mesophilic bacterium that was isolated from Right colon sample from patient.
NCBI tax id
- NCBI tax id: 1871003
- Matching level: species
strain history
- @ref: 66810
- history: <- F. Cadoret, CHU Hopital de la Timone, Marseille Cedex 05, France; Marseille-P3084
doi: 10.13145/bacdive159906.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Bacteroidia
- order: Bacteroidales
- family: Rikenellaceae
- genus: Tidjanibacter
- species: Tidjanibacter massiliensis
- full scientific name: Tidjanibacter massiliensis Mailhe et al. 2017
@ref: 66810
domain: Bacteria
phylum: Bacteroidetes
class: Bacteroidia
order: Bacteroidales
family: Rikenellaceae
genus: Tidjanibacter
species: Tidjanibacter massiliensis
full scientific name: Tidjanibacter massiliensis Mailhe et al. 2017
type strain: no
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | no | 90.493 | |
| 69480 | 99.998 | negative |
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 66810 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | yes | https://mediadive.dsmz.de/medium/693 | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base |
| 66810 | CHOPPED MEAT MEDIUM (DSMZ Medium 78) | yes | https://mediadive.dsmz.de/medium/78 | Name: CHOPPED MEAT MEDIUM (DSMZ Medium 78) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l Ethanol 9.5 g/l (optional) K2HPO4 5.0 g/l Yeast extract 5.0 g/l L-Cysteine HCl 0.5 g/l Haemin 0.005 g/l (optional) Resazurin 0.001 g/l Vitamin K3 0.0005 g/l (optional) Vitamin K1 (optional) NaOH (optional) Distilled water |
culture temp
- @ref: 66810
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 69480
- oxygen tolerance: anaerobe
- confidence: 99.619
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69480 | no | 99.999 |
| 69481 | no | 100 |
Isolation, sampling and environmental information
isolation
- @ref: 66810
- sample type: Right colon sample from patient
- geographic location: Marseille
- country: France
- origin.country: FRA
- continent: Europe
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Tidjanibacter massiliensis Marseille-P3084T | GCA_900104605 | scaffold | ncbi | 1871003 |
| 66792 | Tidjanibacter massiliensis Marseille-P3084 | 2788499931 | draft | img | 1871003 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | no | 90.394 | no |
| glucose-ferment | no | 64.478 | no |
| flagellated | no | 97.949 | no |
| gram-positive | no | 98.336 | no |
| anaerobic | yes | 99.052 | no |
| aerobic | no | 97.216 | no |
| halophile | no | 91.112 | no |
| spore-forming | no | 97.817 | no |
| thermophile | no | 94.683 | no |
| glucose-util | yes | 76.705 | no |
External links
@ref: 66810
culture collection no.: DSM 103552, Marseille-P3084
literature
- topic: Phylogeny
- Pubmed-ID: 28275433
- title: 'Tidjanibacter massiliensis' gen. nov., sp. nov., a new bacterial species isolated from human colon.
- authors: Mailhe M, Ricaboni D, Benezech A, Lagier JC, Fournier PE, Raoult D
- journal: New Microbes New Infect
- DOI: 10.1016/j.nmni.2016.12.010
- year: 2016
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 66810 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-103552 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 103552) | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |