Cite this strain

"Tidjanibacter massiliensis" (DSM 103552, Marseille-P3084)

BacDive ID 159906

Type strain

Culture col. no. DSM 103552 Marseille-P3084

NCBI tax ID(s) 1871003

Special Collections DSMZ Cadoret human gut

Links

"Tidjanibacter massiliensis" DSM 103552 is a mesophilic prokaryote that was isolated from Right colon sample from patient.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 400831

DSM 103552

@ref 20215

Last LPSN update 2025-12-16 10:08:22

Domain Pseudomonadati

Phylum Bacteroidota

Class Bacteroidia

Order Bacteroidales

Family Rikenellaceae

Genus "Tidjanibacter"

Species "Tidjanibacter massiliensis"

Full scientific name Tidjanibacter massiliensis Mailhe et al. 2017

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	99.6
125438	negative	97.151

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
66810	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)		Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
66810	CHOPPED MEAT MEDIUM (DSMZ Medium 78)		Medium recipe at MediaDive	Name: CHOPPED MEAT MEDIUM (DSMZ Medium 78) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l Ethanol 9.5 g/l (optional) K2HPO4 5.0 g/l Yeast extract 5.0 g/l L-Cysteine HCl 0.5 g/l Haemin 0.005 g/l (optional) Resazurin 0.001 g/l Vitamin K3 0.0005 g/l (optional) Vitamin K1 (optional) NaOH (optional) Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
66810	positive	growth	37	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	anaerobe	99.4

Spore formation

@ref	Spore formation	Confidence
125439		99.6
125438		93.291

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
66810	Right colon sample from patient	Marseille	France	FRA	Europe

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	IMG accession	NCBI tax ID	Score
66792	PRJEB16355 assembly for Tidjanibacter massiliensis Marseille-P3084	scaffold	GCA_900104605	2788499931	1871003	74.87

Genome browser: GCA_900104605

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
124043	Tidjanibacter massiliensis partial 16S rRNA gene, type strain Marseille-P3084T	LT598563	1492		1871003

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Tidjanibacter massiliensis Marseille-P3084T
NCBI: GCA_900104605

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.60	no
125439	motility	BacteriaNetⓘ	yes	50.90	no
125439	gram_stain	BacteriaNetⓘ	negative	99.60	no
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	99.40	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Tidjanibacter massiliensis Marseille-P3084
NCBI: GCA_900104605.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.15	no
125438	anaerobic	anaerobicⓘ	yes	87.53	no
125438	aerobic	aerobicⓘ	no	93.60	no
125438	spore-forming	spore-formingⓘ	no	93.29	no
125438	thermophilic	thermophileⓘ	no	93.19	yes
125438	flagellated	motile2+ⓘ	no	88.67	no

Literature

Title	Authors	Journal	DOI	Year
The Genus Alistipes: Gut Bacteria With Emerging Implications to Inflammation, Cancer, and Mental Health.	Parker BJ, Wearsch PA, Veloo ACM, Rodriguez-Palacios A.	Front Immunol	10.3389/fimmu.2020.00906	2020
'Tidjanibacter massiliensis' gen. nov., sp. nov., a new bacterial species isolated from human colon.	Mailhe M, Ricaboni D, Benezech A, Lagier JC, Fournier PE, Raoult D	New Microbes New Infect	10.1016/j.nmni.2016.12.010	2016

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66810	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 103552
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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"Tidjanibacter massiliensis" (DSM 103552, Marseille-P3084)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_900104605

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

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