Strain identifier

BacDive ID: 159865

Type strain: Yes

Species: Maribacter maritimus

Strain Designation: HMF3635

Strain history: <- Kiseoung Joh, Hankuk Univ. of Foreign Studies.

NCBI tax ID(s): 2231015 (species)

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General

@ref: 66595

BacDive-ID: 159865

keywords: 16S sequence, Bacteria, aerobe, Gram-negative, motile, rod-shaped, colony-forming

description: Maribacter maritimus HMF3635 is an aerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from seawater.

NCBI tax id

  • NCBI tax id: 2231015
  • Matching level: species

strain history

  • @ref: 67771
  • history: <- Kiseoung Joh, Hankuk Univ. of Foreign Studies.

doi: 10.13145/bacdive159865.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Maribacter
  • species: Maribacter maritimus
  • full scientific name: Maribacter maritimus Kang et al. 2018

@ref: 66595

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Maribacter

species: Maribacter maritimus

strain designation: HMF3635

type strain: yes

Morphology

cell morphology

  • @ref: 66595
  • gram stain: negative
  • cell length: 2.7-3.9 µm
  • cell width: 0.4-0.5 µm
  • cell shape: rod-shaped
  • motility: yes
  • flagellum arrangement: gliding

colony morphology

  • @ref: 66595
  • colony size: 0.5-0.7 mm
  • colony color: yellow
  • colony shape: circular
  • incubation period: 3 days
  • medium used: Marine agar (MA)

pigmentation

  • @ref: 66595
  • production: yes
  • name: flexirubin-tpe

Culture and growth conditions

culture medium

@refnamegrowth
66595blood agarno
66595Marine agar (MA)yes
66595MacConkeyno
66595Nutrient agar (NA)no
66595Reasoner's 2A agar (R2A)no
66595tryptic soy agar (TSA)no

culture temp

@refgrowthtypetemperature
66595positiveoptimum30
66595positivegrowth20-37
67771positivegrowth30

culture pH

@refabilitytypepH
66595positiveoptimum7
66595positivegrowth6-8

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
66595aerobe
67771aerobe

halophily

@refsaltgrowthtested relationconcentration
66595NaClpositivegrowth1.0-4.0 %
66595NaClpositiveoptimum2 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6659553258citric acid-assimilation
665956731melezitose+builds acid from
6659512936D-galactose+builds acid from
6659515443inulin+builds acid from
6659515824D-fructose+builds acid from
6659516024D-mannose+builds acid from
6659516634raffinose+builds acid from
6659517057cellobiose+builds acid from
6659517306maltose+builds acid from
6659517634D-glucose+builds acid from
6659517716lactose+builds acid from
6659517814salicin+builds acid from
6659517992sucrose+builds acid from
6659518305arbutin+builds acid from
6659527082trehalose+builds acid from
6659527613amygdalin+builds acid from
6659528017starch+builds acid from
6659528053melibiose+builds acid from
6659528066gentiobiose+builds acid from
6659532528turanose+builds acid from
6659543943methyl alpha-D-mannoside+builds acid from
6659559640N-acetylglucosamine+builds acid from
66595320061methyl alpha-D-glucopyranoside+builds acid from
66595esculin ferric citrate+builds acid from
6659517234glucose-fermentation
6659517268myo-inositol-fermentation
6659517992sucrose-fermentation
6659522599arabinose-fermentation
6659526546rhamnose-fermentation
6659527613amygdalin-fermentation
6659528053melibiose-fermentation
6659529864mannitol-fermentation
6659530911sorbitol-fermentation
6659516991dna-hydrolysis
6659523652dextrin-hydrolysis
6659528017starch-hydrolysis
6659562968cellulose-hydrolysis
6659585146carboxymethylcellulose-hydrolysis
66595casein-hydrolysis
665954853esculin+hydrolysis
6659517632nitrate-reduction

antibiotic resistance

@refChEBImetaboliteis antibioticis sensitivesensitivity conc.is resistantresistance conc.
6659517698chloramphenicolyesyes30 µg (disc)
6659548923erythromycinyesyes15 µg (disc)
6659528077rifampicinyesyes30 µg (disc)
6659528971ampicillinyesyes10 µg (disc)
6659517833gentamicinyesyes10 µg (disc)
665956104kanamycinyesyes30 µg (disc)
6659518208penicillin gyesyes10 Unit (disc)
6659517076streptomycinyesyes10 µg (disc)
6659527902tetracyclineyesyes30 µg (disc)
6659528001vancomycinyesyes30 µg (disc)

metabolite production

@refChebi-IDmetaboliteproduction
6659515688acetoinno
6659516136hydrogen sulfideno
6659535581indoleno

metabolite tests

  • @ref: 66595
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: -

enzymes

@refvalueactivityec
66595alpha-chymotrypsin-3.4.21.1
66595alpha-fucosidase-3.2.1.51
66595arginine dihydrolase-3.5.3.6
66595beta-galactosidase-3.2.1.23
66595beta-glucosidase-3.2.1.21
66595beta-glucuronidase-3.2.1.31
66595cystine arylamidase-3.4.11.3
66595lipase (C 14)-
66595lysine decarboxylase-4.1.1.18
66595ornithine decarboxylase-4.1.1.17
66595trypsin-3.4.21.4
66595tryptophan deaminase-4.1.99.1
66595urease-3.5.1.5
66595acid phosphatase+3.1.3.2
66595alkaline phosphatase+3.1.3.1
66595alpha-galactosidase+3.2.1.22
66595alpha-glucosidase+3.2.1.20
66595alpha-mannosidase+3.2.1.24
66595beta-galactosidase+3.2.1.23
66595catalase+1.11.1.6
66595cytochrome oxidase+1.9.3.1
66595esterase (C 4)+
66595esterase Lipase (C 8)+
66595gelatinase+
66595leucine arylamidase+3.4.11.1
66595N-acetyl-beta-glucosaminidase+3.2.1.52
66595naphthol-AS-BI-phosphohydrolase+
66595valine arylamidase+

fatty acid profile

  • fatty acids

    @reffatty acidpercentage
    66595C16:0 3OH1
    66595C17:0 iso0.6
    66595C15:0 anteiso0.8
    66595C12:00.8
    66595C14:00.9
    66595C12:0 iso0.9
    66595C15:1 w6c1.2
    66595C13:0 iso1.3
    66595C16:01.8
    66595C17:0 iso 3OH14.4
    66595C15:1 iso G17.8
    66595C15:0 iso29.5
    66595C15:0 iso 3OH7.3
    66595C16:1 w7c / C16:1 w6c9.6
    66595C16:0 10-methyl / iso-C17:1w9c9.7
  • type of FA analysis: whole cell analysis
  • incubation medium: MA
  • incubation temperature: 30
  • software version: Sherlock 6.0
  • library/peak naming table: RTSBA6
  • system: MIS MIDI
  • method/protocol: Sasser, 1990
  • cutoff value:

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitudeenrichment cultureenrichment culture durationenrichment culture temperature
66595seawaterEast SeaRepublic of KoreaKORAsia37.9319128.794MA7 days30
67771From sea waterGangneung-si, Gangwon-do ProvinceRepublic of KoreaKORAsia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #Marine

taxonmaps

  • @ref: 69479
  • File name: preview.99_49525.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_141;96_3141;97_17657;98_35596;99_49525&stattab=map
  • Last taxonomy: Maribacter maritimus subclade
  • 16S sequence: KX343048
  • Sequence Identity:
  • Total samples: 286
  • soil counts: 5
  • aquatic counts: 274
  • animal counts: 4
  • plant counts: 3

Sequence information

16S sequences

  • @ref: 66595
  • description: Maribacter maritimus strain HMF3635 16S ribosomal RNA gene, partial sequence
  • accession: KX343048
  • length: 1466
  • database: nuccore
  • NCBI tax ID: 2231015

GC content

  • @ref: 66595
  • GC-content: 38.70
  • method: Thermal denaturation, fluorometry

External links

@ref: 66595

culture collection no.: KCTC 52399, NBRC 112671

literature

  • topic: Phylogeny
  • Pubmed-ID: 29893666
  • title: Maribacter maritimus sp. nov., isolated from seawater.
  • authors: Kang H, Cha I, Kim H, Joh K
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.002843
  • year: 2018
  • mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacteriaceae/*classification/genetics/isolation & purification, Phosphatidylethanolamines, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
66595Heeyoung Kang, Inseong Cha, Haneul Kim and Kiseong JohMaribacter maritimus sp. nov., isolated from seawater10.1099/ijsem.0.002843IJSEM 68: 2431-2436 201829893666
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/