Strain identifier

BacDive ID: 159764

Type strain: Yes

Species: Flagellimonas aquimarina

Strain Designation: ECD12

Strain history: <- Chi Nam Seong, Sunchon National Univ.

NCBI tax ID(s): 2201895 (species)

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General

@ref: 66697

BacDive-ID: 159764

keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-negative, rod-shaped, colony-forming

description: Flagellimonas aquimarina ECD12 is an aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from seaweed Ecklonia cava.

NCBI tax id

  • NCBI tax id: 2201895
  • Matching level: species

strain history

@refhistory
67770C. N. Seong; Sunchon Natl. Univ., South Korea; ECD12.
67771<- Chi Nam Seong, Sunchon National Univ.

doi: 10.13145/bacdive159764.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Flagellimonas
  • species: Flagellimonas aquimarina
  • full scientific name: Flagellimonas aquimarina Choi et al. 2018

  • synonyms

    @refsynonym
    20215Allomuricauda koreensis
    20215Muricauda koreensis

@ref: 66697

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Flagellimonas

species: Flagellimonas aquimarina

strain designation: ECD12

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
66697negative0.7-1 µm0.3-0.5 µmrod-shapedno
69480negative99.945

colony morphology

@refcolony sizecolony colorcolony shapeincubation periodmedium used
666971 mmyellowcircular3 daysMarine agar (MA) 2216
66697irregular

pigmentation

  • @ref: 66697
  • production: no
  • name: flexirubin-type

Culture and growth conditions

culture medium

  • @ref: 66697
  • name: Marine agar (MA) 2216
  • growth: yes

culture temp

@refgrowthtypetemperaturerange
66697positivegrowth10-35
66697positiveoptimum25-30mesophilic
67770positivegrowth30mesophilic
67771positivegrowth25mesophilic

culture pH

@refabilitytypepHPH range
66697positiveoptimum7-8
66697positivegrowth7-9alkaliphile

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
66697aerobe
67771aerobe

spore formation

@refspore formationconfidence
66697no
69480no99.999
69481no100

halophily

@refsaltgrowthtested relationconcentration
66697Marine saltspositivegrowth1-8 %(w/v)
66697Marine saltspositiveoptimum4-6 %(w/v)

observation

@refobservation
66697Form irregular aggregate during growth in marine broth.
67770quinones: MK-6

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6669716024D-mannose-assimilation
6669716899D-mannitol-assimilation
6669717128adipate-assimilation
6669717306maltose-assimilation
6669717634D-glucose-assimilation
6669718401phenylacetate-assimilation
6669725115malate-assimilation
6669727689decanoate-assimilation
6669730849L-arabinose-assimilation
6669732032potassium gluconate-assimilation
6669753258sodium citrate-assimilation
6669759640N-acetylglucosamine-assimilation
6669712936D-galactose-builds acid from
6669715824D-fructose-builds acid from
6669716024D-mannose-builds acid from
6669716899D-mannitol-builds acid from
6669717306maltose-builds acid from
6669717716lactose-builds acid from
6669717992sucrose-builds acid from
6669762345L-rhamnose-builds acid from
6669717634D-glucose+builds acid from
6669765327D-xylose+builds acid from
666975291gelatin-hydrolysis
6669716199urea-hydrolysis
6669716991dna-hydrolysis
6669717029chitin-hydrolysis
6669717895L-tyrosine-hydrolysis
6669728017starch-hydrolysis
6669737166xylan-hydrolysis
6669753424tween 20-hydrolysis
6669753426tween 80-hydrolysis
6669785146carboxymethylcellulose-hydrolysis
66697casein-hydrolysis
666974853esculin+hydrolysis
6669717632nitrate-reduction
66697synthetic sea salts (sss)+required for growth

antibiotic resistance

@refChEBImetaboliteis antibioticis resistantresistance conc.is sensitivesensitivity conc.
666972637Amikacinyesyes30 µg (disc)
6669728971ampicillinyesyes10 µg (disc)
6669717698chloramphenicolyesyes30 µg (disc)
6669748923erythromycinyesyes15 µg (disc)
6669717833gentamicinyesyes10 µg (disc)
666976104kanamycinyesyes30 µg (disc)
66697100147nalidixic acidyesyes30 µg (disc)
6669717334penicillinyesyes10 Unit (disc)
666978309polymyxin byesyes300 Unit (disc)
6669717076streptomycinyesyes10 µg (disc)
6669727902tetracyclineyesyes30 µg (disc)
6669728001vancomycinyesyes30 µg (disc)

metabolite production

@refChebi-IDmetaboliteproduction
6669716136hydrogen sulfideno
6669735581indoleno

enzymes

@refvalueactivityec
66697alpha-fucosidase-3.2.1.51
66697alpha-galactosidase-3.2.1.22
66697alpha-glucosidase-3.2.1.20
66697alpha-mannosidase-3.2.1.24
66697beta-galactosidase-3.2.1.23
66697beta-glucuronidase-3.2.1.31
66697cystine arylamidase-3.4.11.3
66697cytochrome oxidase-1.9.3.1
66697esterase Lipase (C 8)-
66697lipase (C 14)-
66697trypsin-3.4.21.4
66697acid phosphatase+3.1.3.2
66697alkaline phosphatase+3.1.3.1
66697alpha-chymotrypsin+3.4.21.1
66697beta-glucosidase+3.2.1.21
66697catalase+1.11.1.6
66697esterase (C 4)+
66697leucine arylamidase+3.4.11.1
66697N-acetyl-beta-glucosaminidase+3.2.1.52
66697naphthol-AS-BI-phosphohydrolase+
66697valine arylamidase+

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    66697Unknown 13.5654.213.565
    66697Unknown 16.5821.416.582
    66697C16:0 iso 3OH3
    66697C15:05
    66697C16:1 w7c/ C16:1 w6c5
    66697C16:0 3OH1.3
    66697C15:0 anteiso1.7
    66697C15:0 iso15.2
    66697C17:1 iso w9c / C16:0 10-methyl2.3
    66697C17:0 iso 3OH23.1
    66697C15:1 iso G25.7
    66697C15:0 iso 3OH5.4
  • type of FA analysis: whole cell analysis
  • incubation medium: marine agar 2216
  • agar/liquid: agar
  • incubation temperature: 25
  • incubation time: 3
  • software version: Sherlock 6.1
  • library/peak naming table: TSBA6
  • system: MIS MIDI
  • cutoff value:

Isolation, sampling and environmental information

isolation

@refsample typehost speciessampling dategeographic locationcountryorigin.countrycontinentlatitudelongitudeenrichment cultureenrichment culture durationenrichment culture temperatureisolation procedure
66697seaweed Ecklonia cavaEcklonia cava2017-02South seaRepublic of KoreaKORAsia34.0494127.333marine agar 22167 days25standard dilution plating technique
67770Seaweed Ecklonia cavaEcklonia cavaRepublic of KoreaKORAsia
67771From Ecklonia cavaGeomundo IslandRepublic of KoreaKORAsia

isolation source categories

Cat1Cat2Cat3
#Host#Algae#Brown Algae
#Environmental#Aquatic#Marine

taxonmaps

  • @ref: 69479
  • File name: preview.99_32879.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15779;96_1572;97_19475;98_24322;99_32879&stattab=map
  • Last taxonomy: Flagellimonas aquimarina subclade
  • 16S sequence: KX245373
  • Sequence Identity:
  • Total samples: 105
  • soil counts: 1
  • aquatic counts: 91
  • animal counts: 12
  • plant counts: 1

Sequence information

16S sequences

  • @ref: 66697
  • description: Flagellimonas sp. strain ECD12 16S ribosomal RNA gene, partial sequence
  • accession: KX245373
  • length: 1443
  • database: ena
  • NCBI tax ID: 2201895

Genome sequences

  • @ref: 67770
  • description: Allomuricauda koreensis ECD12
  • accession: GCA_003149745
  • assembly level: scaffold
  • database: ncbi
  • NCBI tax ID: 2201895

GC content

  • @ref: 66697
  • GC-content: 39
  • method: high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

  • trait: spore-forming
  • prediction: no
  • confidence: 100
  • training_data: no

External links

@ref: 66697

culture collection no.: KCTC 52351, JCM 32292

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
66697Seon Choi, Ji Hee Lee, Joo Won Kang, Han Na Choe, Chi Nam SeongFlagellimonas aquimarina sp. nov., and transfer of Spongiibacterium flavum Yoon and Oh 2012 and S. pacificum Gao et al. 2015 to the genus Flagellimonas Bae et al. 2007 as Flagellimonas flava comb. nov. and F. pacifica comb. nov., respectively10.1099/ijsem.0.002975IJSEM 68: 3266-3272 201830113301
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1