Flagellimonas aquimarina (KCTC 52351, JCM 32292, ECD12)

Name: Flagellimonas aquimarina (KCTC 52351, JCM 32292, ECD12)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 159764

Type strain

Strain Designation ECD12

Culture col. no. KCTC 52351 JCM 32292 ECD12

NCBI tax ID(s) 2201895

Special Collections JCM KCTC Literature strains

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Flagellimonas aquimarina ECD12 is an aerobe, Gram-negative, rod-shaped prokaryote that forms circular colonies and was isolated from seaweed Ecklonia cava.

Gram-negative rod-shaped colony-forming aerobe genome sequence 16S sequence

Name and taxonomic classification

SI-ID 26531

KCTC 52351,JCM 32292

@ref 20215

Last LPSN update 2025-12-16 10:08:20

Domain Pseudomonadati

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Flavobacteriaceae

Genus Flagellimonas

Species Flagellimonas aquimarina

Full scientific name Flagellimonas aquimarina Choi et al. 2018

Synonyms (2)

Allomuricauda koreensis
Muricauda koreensis

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility	Confidence
66697	negative	0.7-1 µm	0.3-0.5 µm	rod-shaped
125439	negative					98.1

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Medium used
66697	1 mm	yellow	circular	3 days	Marine agar (MA) 2216
66697			irregular

Pigmentation

@ref	Production	Name
66697		flexirubin type pigments

Culture and growth conditions

Culture medium

@ref	Name	Growth
66697	Marine agar (MA) 2216

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
66697	positive	growth	10-35
66697	positive	optimum	25-30	mesophilic
67770	positive	growth	30	mesophilic
67771	positive	growth	25	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
66697	positive	optimum	7-8
66697	positive	growth	7-9	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
66697	aerobe
67771	aerobe

Spore formation

66697

Spore formationno

Halophily

@ref	Salt	Growth	Tested relation	Concentration
66697	Marine salts	positive	growth	1-8 %(w/v)
66697	Marine salts	positive	optimum	4-6 %(w/v)

Observation

@ref	Observation
66697	Form irregular aggregate during growth in marine broth.
67770	quinones: MK-6

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
66697	17128 ChEBI	adipate	-	assimilation
66697	85146 ChEBI	carboxymethylcellulose	-	hydrolysis
66697		casein	-	hydrolysis
66697	17029 ChEBI	chitin	-	hydrolysis
66697	15824 ChEBI	D-fructose	-	builds acid from
66697	12936 ChEBI	D-galactose	-	builds acid from
66697	17634 ChEBI	D-glucose	-	assimilation
66697	17634 ChEBI	D-glucose	+	builds acid from
66697	16899 ChEBI	D-mannitol	-	assimilation
66697	16899 ChEBI	D-mannitol	-	builds acid from
66697	16024 ChEBI	D-mannose	-	assimilation
66697	16024 ChEBI	D-mannose	-	builds acid from
66697	65327 ChEBI	D-xylose	+	builds acid from
66697	27689 ChEBI	decanoate	-	assimilation
66697	16991 ChEBI	dna	-	hydrolysis
66697	4853 ChEBI	esculin	+	hydrolysis
66697	5291 ChEBI	gelatin	-	hydrolysis
66697	30849 ChEBI	L-arabinose	-	assimilation
66697	62345 ChEBI	L-rhamnose	-	builds acid from
66697	17895 ChEBI	L-tyrosine	-	hydrolysis
66697	17716 ChEBI	lactose	-	builds acid from
66697	25115 ChEBI	malate	-	assimilation
66697	17306 ChEBI	maltose	-	assimilation
66697	17306 ChEBI	maltose	-	builds acid from
66697	59640 ChEBI	N-acetylglucosamine	-	assimilation
66697	17632 ChEBI	nitrate	-	reduction
66697	18401 ChEBI	phenylacetate	-	assimilation
66697	32032 ChEBI	potassium gluconate	-	assimilation
66697	53258 ChEBI	sodium citrate	-	assimilation
66697	28017 ChEBI	starch	-	hydrolysis
66697	17992 ChEBI	sucrose	-	builds acid from
66697		synthetic sea salts (sss)	+	required for growth
66697	53424 ChEBI	tween 20	-	hydrolysis
66697	53426 ChEBI	tween 80	-	hydrolysis
66697	16199 ChEBI	urea	-	hydrolysis
66697	37166 ChEBI	xylan	-	hydrolysis

Antibiotic resistance

@ref	ChEBI	Metabolite	Resistance conc.	Sensitivity conc.
66697	2637	Amikacin	30 µg (disc)
66697	28971	ampicillin	10 µg (disc)
66697	17698	chloramphenicol	30 µg (disc)
66697	48923	erythromycin	15 µg (disc)
66697	17833	gentamicin	10 µg (disc)
66697	6104	kanamycin	30 µg (disc)
66697	100147	nalidixic acid	30 µg (disc)
66697	17334	penicillin	10 Unit (disc)
66697	8309	polymyxin b	300 Unit (disc)
66697	17076	streptomycin	10 µg (disc)
66697	27902	tetracycline	30 µg (disc)
66697	28001	vancomycin		30 µg (disc)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
66697	16136 ChEBI	hydrogen sulfide
66697	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
66697	acid phosphatase	+	3.1.3.2
66697	alkaline phosphatase	+	3.1.3.1
66697	alpha-chymotrypsin	+	3.4.21.1
66697	alpha-fucosidase	-	3.2.1.51
66697	alpha-galactosidase	-	3.2.1.22
66697	alpha-glucosidase	-	3.2.1.20
66697	alpha-mannosidase	-	3.2.1.24
66697	beta-galactosidase	-	3.2.1.23
66697	beta-glucosidase	+	3.2.1.21
66697	beta-glucuronidase	-	3.2.1.31
66697	catalase	+	1.11.1.6
66697	cystine arylamidase	-	3.4.11.3
66697	cytochrome oxidase	-	1.9.3.1
66697	esterase (C 4)	+
66697	esterase Lipase (C 8)	-
66697	leucine arylamidase	+	3.4.11.1
66697	lipase (C 14)	-
66697	N-acetyl-beta-glucosaminidase	+	3.2.1.52
66697	naphthol-AS-BI-phosphohydrolase	+
66697	trypsin	-	3.4.21.4
66697	valine arylamidase	+

Fatty acid profile

Metadata FA analysis

@ref

66697

Fatty acid	Percentage	ECL
C15:1 iso G	25.7
C17:0 iso 3OH	23.1
C15:0 iso	15.2
C15:0 iso 3OH	5.4
C15:0	5
C16:1 w7c/ C16:1 w6c	5
Unknown 13.565	4.2	13.565
C16:0 iso 3OH	3
C17:1 iso w9c / C16:0 10-methyl	2.3
C15:0 anteiso	1.7
Unknown 16.582	1.4	16.582
C16:0 3OH	1.3

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Algae	#Brown Algae
#Environmental	#Aquatic	#Marine

Isolation

@ref	Sample type	Host species	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude	Enrichment culture	Enrichment culture duration	Enrichment culture temperature	Isolation procedure
66697	seaweed Ecklonia cava	Ecklonia cava	2017-02	South sea	Republic of Korea	KOR	Asia	34.0494	127.333 34.0494/127.333	marine agar 2216	7 days	25	standard dilution plating technique
67770	Seaweed Ecklonia cava	Ecklonia cava			Republic of Korea	KOR	Asia
67771	From Ecklonia cava			Geomundo Island	Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence KX245373 (>99% sequence identity) for Flagellimonas aquimarina subclade from Microbeatlas

Aquatic Samples	91
Soil Samples	1
Animal Samples	12
Plant Samples	1
Total Samples	105

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM314974v1 assembly for Flagellimonas aquimarina ECD12	scaffold	GCA_003149745	2201895.3	2832424143	2201895	77.91

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
66697	Flagellimonas aquimarina strain ECD12 16S ribosomal RNA gene, partial sequence	KX245373	1443		2201895

GC content

@ref	GC-content (mol%)	Method
66697	39	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Allomuricauda koreensis ECD12
NCBI: GCA_003149745

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	87.30	no
125439	motility	BacteriaNetⓘ	no	74.80	no
125439	gram_stain	BacteriaNetⓘ	negative	98.10	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	82.80	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Analysis of 1,000 Type-Strain Genomes Improves Taxonomic Classification of Bacteroidetes.	Garcia-Lopez M, Meier-Kolthoff JP, Tindall BJ, Gronow S, Woyke T, Kyrpides NC, Hahnke RL, Goker M.	Front Microbiol	10.3389/fmicb.2019.02083	2019
	Flagellimonas hymeniacidonis sp. nov., Isolated from the Sponge Hymeniacidon sinapium.	Shin TG, Park JS.	Curr Microbiol	10.1007/s00284-020-02328-1	2021
Phylogeny	Flagellimonas aquimarina sp. nov., and transfer of Spongiibacterium flavum Yoon and Oh 2012 and S. pacificum Gao et al. 2015 to the genus Flagellimonas Bae et al. 2007 as Flagellimonas flava comb. nov. and F. pacifica comb. nov., respectively.	Choi S, Lee JH, Kang JW, Choe HN, Seong CN.	Int J Syst Evol Microbiol	10.1099/ijsem.0.002975	2018

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66697	Seon Choi, Ji Hee Lee, Joo Won Kang, Han Na Choe, Chi Nam Seong: Flagellimonas aquimarina sp. nov., and transfer of Spongiibacterium flavum Yoon and Oh 2012 and S. pacificum Gao et al. 2015 to the genus Flagellimonas Bae et al. 2007 as Flagellimonas flava comb. nov. and F. pacifica comb. nov., respectively. IJSEM 68: 3266 - 3272 2018 ( DOI 10.1099/ijsem.0.002975 , PubMed 30113301 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Flagellimonas aquimarina (KCTC 52351, JCM 32292, ECD12)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Antibiotic resistance

Metabolite production

Enzymes

Fatty acid profile?

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_003149745

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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Fatty acid profile