Strain identifier

BacDive ID: 159652

Type strain: Yes

Species: Abditibacterium utsteinense

Strain Designation: R-68213

Strain history: <- A. Willems, Lab. Microbiology, Ghent Univ., Belgium <- G. Tahon, Laboratory of Microbiology, Ghent University, Gent, Belgium

NCBI tax ID(s): 1960156 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8 (current version):
version 7.1:
version 7:
version 6:
version 5:
version 8 (current version)

General

@ref: 66502

BacDive-ID: 159652

DSM-Number: 105287

keywords: genome sequence, 16S sequence, Bacteria, psychrophilic

description: Abditibacterium utsteinense R-68213 is a psychrophilic bacterium that was isolated from Top surface sample consisting of weathered granite parent material, elevation 1382 m.

NCBI tax id

  • NCBI tax id: 1960156
  • Matching level: species

strain history

  • @ref: 66502
  • history: <- A. Willems, Lab. Microbiology, Ghent Univ., Belgium <- G. Tahon, Laboratory of Microbiology, Ghent University, Gent, Belgium

doi: 10.13145/bacdive159652.20230509.8

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/abditibacteriota
  • domain: Bacteria
  • phylum: Abditibacteriota
  • class: Abditibacteriia
  • order: Abditibacteriales
  • family: Abditibacteriaceae
  • genus: Abditibacterium
  • species: Abditibacterium utsteinense
  • full scientific name: Abditibacterium utsteinense Tahon et al. 2018

@ref: 66502

domain: Bacteria

phylum: Abditibacteriota

class: Abditibacteria

order: Abditibacteriales

family: Abditibacteriaceae

genus: Abditibacterium

species: Abditibacterium utsteinense

full scientific name: Abditibacterium utsteinense Tahon et al. 2018

strain designation: R-68213

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: negative
  • confidence: 99.151

multimedia

  • @ref: 66502
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_105287.jpg
  • caption: DSM 105287 on medium 830 at 20 °C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

  • @ref: 66502
  • name: R2A MEDIUM (DSMZ Medium 830)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/830
  • composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

culture temp

  • @ref: 66502
  • growth: positive
  • type: growth
  • temperature: 20
  • range: psychrophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69480no99.934
69481no100

Isolation, sampling and environmental information

isolation

  • @ref: 66502
  • sample type: Top surface sample consisting of weathered granite parent material, elevation 1382 m
  • geographic location: East Antarctica, Utsteinen, near Belgian Princess Elisabeth Station (71° 57' S, 23° 20' E)
  • country: Antarctica
  • origin.country: ATA
  • continent: Australia and Oceania
  • latitude: -71.9465
  • longitude: 23.3457

isolation source categories

Cat1Cat2Cat3
#Climate#Cold#Alpine
#Environmental#Terrestrial#Geologic

Sequence information

16S sequences

  • @ref: 66502
  • description: Abditibacterium utsteinense strain R-68213 16S ribosomal RNA gene, partial sequence
  • accession: KY386500
  • length: 1473
  • database: ena
  • NCBI tax ID: 1960156

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Abditibacterium utsteinense LMG 29911GCA_002973605contigncbi1960156
66792Abditibacterium utsteinense strain LMG 299111960156.3wgspatric1960156

GC content

  • @ref: 66502
  • GC-content: 54.27
  • method: sequence analysis

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
anaerobicno79.967no
gram-positiveno99.151yes
spore-formingno99.934no
spore-formingno100no
thermophileno99.544yes
motileno78.687no

External links

@ref: 66502

culture collection no.: DSM 105287, LMG 29911

literature

  • topic: Phylogeny
  • Pubmed-ID: 29475572
  • title: Abditibacterium utsteinense sp. nov., the first cultivated member of candidate phylum FBP, isolated from ice-free Antarctic soil samples.
  • authors: Tahon G, Tytgat B, Lebbe L, Carlier A, Willems A
  • journal: Syst Appl Microbiol
  • DOI: 10.1016/j.syapm.2018.01.009
  • year: 2018
  • mesh: Antarctic Regions, Bacterial Typing Techniques, Base Composition, Base Sequence, DNA, Bacterial/genetics, Drug Resistance, Multiple, Bacterial/genetics, Fatty Acids/analysis, Genome, Bacterial/*genetics, *Gram-Negative Anaerobic Bacteria/classification/genetics/isolation & purification/metabolism, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Soil Microbiology
  • topic2: Genetics

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
66502Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-105287Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 105287)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1