General

@ref: 66502

BacDive-ID: 159652

DSM-Number: 105287

keywords: genome sequence, 16S sequence, Bacteria, psychrophilic, Gram-negative

description: Abditibacterium utsteinense R-68213 is a psychrophilic, Gram-negative bacterium that was isolated from Top surface sample consisting of weathered granite parent material, elevation 1382 m.

NCBI tax id

• NCBI tax id: 1960156
• Matching level: species

strain history

• @ref: 66502
• history: <- A. Willems, Lab. Microbiology, Ghent Univ., Belgium <- G. Tahon, Laboratory of Microbiology, Ghent University, Gent, Belgium

doi: 10.13145/bacdive159652.20230509.8.1

Name and taxonomic classification

LPSN

• @ref: 20215
• description: domain/bacteria
• keyword: phylum/abditibacteriota
• domain: Bacteria
• phylum: Abditibacteriota
• class: Abditibacteriia
• order: Abditibacteriales
• family: Abditibacteriaceae
• genus: Abditibacterium
• species: Abditibacterium utsteinense
• full scientific name: Abditibacterium utsteinense Tahon et al. 2018

@ref: 66502

domain: Bacteria

phylum: Abditibacteriota

class: Abditibacteria

order: Abditibacteriales

family: Abditibacteriaceae

genus: Abditibacterium

species: Abditibacterium utsteinense

full scientific name: Abditibacterium utsteinense Tahon et al. 2018

strain designation: R-68213

type strain: yes

Morphology

cell morphology

• @ref: 69480
• gram stain: negative
• confidence: 99.151

multimedia

• @ref: 66502
• multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_105287.jpg
• caption: DSM 105287 on medium 830 at 20 °C
• intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

• @ref: 66502
• name: R2A MEDIUM (DSMZ Medium 830)
• growth: yes
• link: https://mediadive.dsmz.de/medium/830
• composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

culture temp

• @ref: 66502
• growth: positive
• type: growth
• temperature: 20
• range: psychrophilic

Physiology and metabolism

spore formation

Isolation, sampling and environmental information

isolation

• @ref: 66502
• sample type: Top surface sample consisting of weathered granite parent material, elevation 1382 m
• geographic location: East Antarctica, Utsteinen, near Belgian Princess Elisabeth Station (71° 57' S, 23° 20' E)
• country: Antarctica
• origin.country: ATA
• continent: Australia and Oceania
• latitude: -71.9465
• longitude: 23.3457

isolation source categories

Sequence information

16S sequences

• @ref: 66502
• description: Abditibacterium utsteinense strain R-68213 16S ribosomal RNA gene, partial sequence
• accession: KY386500
• length: 1473
• database: ena
• NCBI tax ID: 1960156

Genome sequences

GC content

• @ref: 66502
• GC-content: 54.27
• method: sequence analysis

Genome-based predictions

predictions

External links

@ref: 66502

culture collection no.: DSM 105287, LMG 29911

straininfo link

• @ref: 112126
• straininfo: 404846

literature

• topic: Phylogeny
• Pubmed-ID: 29475572
• title: Abditibacterium utsteinense sp. nov., the first cultivated member of candidate phylum FBP, isolated from ice-free Antarctic soil samples.
• authors: Tahon G, Tytgat B, Lebbe L, Carlier A, Willems A
• journal: Syst Appl Microbiol
• DOI: 10.1016/j.syapm.2018.01.009
• year: 2018
• mesh: Antarctic Regions, Bacterial Typing Techniques, Base Composition, Base Sequence, DNA, Bacterial/genetics, Drug Resistance, Multiple, Bacterial/genetics, Fatty Acids/analysis, Genome, Bacterial/*genetics, *Gram-Negative Anaerobic Bacteria/classification/genetics/isolation & purification/metabolism, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Soil Microbiology
• topic2: Genetics

Reference