Abditibacterium utsteinense (DSM 105287, R-68213, LMG 29911)

Name: Abditibacterium utsteinense (DSM 105287, R-68213, LMG 29911)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 159652

Type strain

Strain Designation R-68213

Culture col. no. DSM 105287 R-68213 LMG 29911

NCBI tax ID(s) 1960156

Special Collections DSMZ

History <- A. Willems, Lab. Microbiology, Ghent Univ., Belgium <- G. Tahon, Laboratory of Microbiology, Ghent University, Gent, Belgium

Links

Abditibacterium utsteinense R-68213 is a psychrophilic prokaryote that was isolated from Top surface sample consisting of weathered granite parent material, elevation 1382 m.

psychrophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 404846

LMG 29911,DSM 105287

@ref 20215

Last LPSN update 2025-12-16 10:08:18

Domain Pseudomonadati

Phylum Abditibacteriota

Class Abditibacteriia

Order Abditibacteriales

Family Abditibacteriaceae

Genus Abditibacterium

Species Abditibacterium utsteinense

Full scientific name Abditibacterium utsteinense Tahon et al. 2018

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	99.7

Multimedia

@ref:	66502
multimedia content:	DSM_105287.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_105287.jpg
caption:	DSM 105287 on medium 830 at 20 °C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
66502	R2A MEDIUM (DSMZ Medium 830)		Medium recipe at MediaDive	Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
66502	positive	growth	20	psychrophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	99.6

Spore formation

@ref	Spore formation	Confidence
125439		98

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Climate	#Cold	#Alpine
#Environmental	#Terrestrial	#Geologic

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
66502	Top surface sample consisting of weathered granite parent material, elevation 1382 m	East Antarctica, Utsteinen, near Belgian Princess Elisabeth Station (71° 57' S, 23° 20' E)	Antarctica	ATA	Australia and Oceania	-71.9465	23.3457 -71.9465/23.3457

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
66792	ASM297360v1 assembly for Abditibacterium utsteinense LMG 29911	contig	GCA_002973605	1960156.3	1960156	61.86

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
66502	Abditibacterium utsteinense strain R-68213 16S ribosomal RNA gene, partial sequence	KY386500	1473		1960156

GC content

@ref	GC-content (mol%)	Method
66502	54.27	sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Abditibacterium utsteinense LMG 29911
NCBI: GCA_002973605

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	98.00	no
125439	motility	BacteriaNetⓘ	no	68.80	no
125439	gram_stain	BacteriaNetⓘ	negative	99.70	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.60	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Abditibacterium utsteinense strain LMG 29911
PATRIC: 1960156.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	79.35	no
125438	anaerobic	anaerobicⓘ	no	86.28	no
125438	spore-forming	spore-formingⓘ	no	73.54	no
125438	aerobic	aerobicⓘ	yes	71.01	no
125438	thermophilic	thermophileⓘ	no	89.47	no
125438	flagellated	motile2+ⓘ	no	75.71	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Abditibacterium utsteinense sp. nov., the first cultivated member of candidate phylum FBP, isolated from ice-free Antarctic soil samples.	Tahon G, Tytgat B, Lebbe L, Carlier A, Willems A	Syst Appl Microbiol	10.1016/j.syapm.2018.01.009	2018

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66502	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 105287
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Abditibacterium utsteinense (DSM 105287, R-68213, LMG 29911)

Name and taxonomic classification

Morphology

Cell morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_002973605

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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