Strain identifier
BacDive ID: 159635
Type strain: 
Species: Gracilibacillus massiliensis
Strain Designation: Awa-1
Strain history: <- S. Khelaifia, Timone Hospital, Marseille, France; Awa-1 <- Unité de Recherche sur les Maladies Infectieuses et Tropicales Émergentes
NCBI tax ID(s): 1564956 (species)
General
@ref: 66479
BacDive-ID: 159635
DSM-Number: 29726
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Gracilibacillus massiliensis Awa-1 is a mesophilic bacterium that was isolated from alimentary sea salt.
NCBI tax id
- NCBI tax id: 1564956
- Matching level: species
strain history
- @ref: 66479
- history: <- S. Khelaifia, Timone Hospital, Marseille, France; Awa-1 <- Unité de Recherche sur les Maladies Infectieuses et Tropicales Émergentes
doi: 10.13145/bacdive159635.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Bacillaceae
- genus: Gracilibacillus
- species: Gracilibacillus massiliensis
- full scientific name: Gracilibacillus massiliensis Diop et al. 2017
@ref: 66479
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Caryophanales
family: Bacillaceae
genus: Gracilibacillus
species: Gracilibacillus massiliensis
full scientific name: Gracilibacillus massiliensis Diop et al. 2017
strain designation: Awa-1
type strain: yes
Culture and growth conditions
culture medium
- @ref: 66479
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
- @ref: 66479
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 66479
- sample type: alimentary sea salt
- geographic location: Camargue
- country: France
- origin.country: FRA
- continent: Europe
isolation source categories
| Cat1 | Cat2 |
|---|---|
| #Engineered | #Food production |
| #Condition | #Saline |
Safety information
risk assessment
- @ref: 66479
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 66479
- description: Gracilibacillus sp. Awa-1 partial 16S rRNA gene, strain Awa-1
- accession: LN626645
- length: 1528
- database: ena
- NCBI tax ID: 1564956
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Gracilibacillus massiliensis Awa-1 | GCA_001458115 | contig | ncbi | 1564956 |
| 66792 | Gracilibacillus massiliensis Awa-1 | 2690315889 | draft | img | 1564956 |
GC content
- @ref: 66479
- GC-content: 36.05
- method: sequence analysis
External links
@ref: 66479
culture collection no.: DSM 29726, CSUR P1441
straininfo link
- @ref: 112109
- straininfo: 405943
literature
- topic: Phylogeny
- Pubmed-ID: 27760679
- title: Microbial culturomics unravels the halophilic microbiota repertoire of table salt: description of Gracilibacillus massiliensis sp. nov.
- authors: Diop A, Khelaifia S, Armstrong N, Labas N, Fournier PE, Raoult D, Million M
- journal: Microb Ecol Health Dis
- DOI: 10.3402/mehd.v27.32049
- year: 2016
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 66479 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-29726 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 29726) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 112109 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID405943.1 |